PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 93546 | ||||||||
Common Name | SELMODRAFT_108937, SELMODRAFT_93546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 126aa MW: 13972.8 Da PI: 9.487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 43 | 90 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + sk Ka++L + ++Y++sLq 93546 43 SHSLAERVRREKISERMKTLQDLVPGC----SKVTGKAMMLDEIINYVQSLQ 90 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.03E-11 | 37 | 94 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-18 | 37 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.183 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-19 | 39 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-9 | 43 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-11 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
QALSESTENT TNSNLGKENS KPGAGNTQDY IHVRARRGQA TDSHSLAERV RREKISERMK 60 TLQDLVPGCS KVTGKAMMLD EIINYVQSLQ RQVEFLSMKL AAVKPALYTD AYQVRKPDVE 120 FLVSS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002970479.2 | 2e-78 | transcription factor BHLH094 | ||||
Refseq | XP_002978556.2 | 5e-78 | transcription factor bHLH63 isoform X1 | ||||
Refseq | XP_024539237.1 | 2e-78 | transcription factor BHLH094 isoform X2 | ||||
Swissprot | Q93W88 | 1e-45 | BH137_ARATH; Transcription factor bHLH137 | ||||
Swissprot | Q9CAA9 | 5e-45 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | D8RGJ6 | 4e-88 | D8RGJ6_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ20542 | 7e-89 | (Selaginella moellendorffii) | ||||
STRING | EFJ28609 | 7e-89 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50915.2 | 6e-48 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 93546 |
Entrez Gene | 9646620 | 9653521 |
Publications ? help Back to Top | |||
---|---|---|---|
|