PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

91791

Common Name

MADS12-1, SELMODRAFT_449663

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

M-type_MADS

Protein Properties

Length: 160aa MW: 17914 Da PI: 6.5399

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
91791	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.3	5.6e-15	10	45	2	37
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevav 37 +i+n++ r+ tf kR g+ KKA+EL vLC+a+v v 91791 10 FIKNQTTRKQTFRKRNGGLYKKAYELAVLCGAQVVV 45 8*********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-12	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.208	1	47	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.39E-18	2	45	No hit	No description
SuperFamily	SSF55455	5.49E-18	2	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-15	10	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-9	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
QGKQKIQIAF IKNQTTRKQT FRKRNGGLYK KAYELAVLCG AQVVVKVDQN EPKGKSETFH 60 YYSWKPDHEN KIPKYNDGSS RTKSSSKSKN TTVDEKFPPP PPPPPPPANE APPNLFEQQQ 120 QIFDEDDASL VALLDDEDYV DVKGSIDEIL GEALGNVFY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024529960.1	1e-114	MADS-box protein 04g005320
TrEMBL	D8REF5	1e-112	D8REF5_SELML; MADS-domain transcription factor
STRING	EFJ29649	1e-113	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	1e-10	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	91791
Entrez Gene	9659726

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]