PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

88990

Common Name

SELMODRAFT_449739

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 372aa MW: 41962.1 Da PI: 6.5981

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
88990	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	439.3	2.7e-134	4	370	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104 l++ Ll c e ++++d a +lL +l++lasp+gd+++R+a++ft AL arl++++ + y al++ + + + +e l a++++++v+P++kf+h+t NqaI e 88990 4 LIHMLLGCGEKIDQEDYIYAGNLLHQLKQLASPTGDSIHRVATHFTDALYARLNGTGYRSYTALRAYDPA--SLEEILGAYHILYQVCPYIKFAHFTSNQAIFE 105 689**************************************************999999888777776..69999*********************** PP GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 a+ege+ vHiiD++i qG QWpa++qaLa+R++g+p+lRiTgvg e+++etg+rLa++A++l+vpfe+++ v +rledl+ ++L+ ++gEalaVn++ 88990 106 AFEGEQSVHIIDLEILQGYQWPAFMQALAARQGGAPHLRITGVGM----PLEAVQETGKRLADLAATLRVPFEYHA-VGERLEDLQSHMLHRRHGEALAVNCID 204 *****************************************....99*********************.7********************** PP GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 + hrl+ +++ + ++ ++L+++++ P++v++veqea+hn++sFl+rflea++yysa+fdslea+lp+ s er+kvE+++++ ei+n+vaceg++r+ rhe++ 88990 205 RFHRLFTDDHLVVNPVVRILSMIREQAPRIVTLVEQEANHNTNSFLKRFLEAMHYYSAIFDSLEATLPQVSPERAKVEQVVFSSEIMNIVACEGSQRIVRHEKV 308 **************************************************************************************************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 kW + +e+ GF +v+ls +a+ q klllr ++ dgy++ e++g+l+lgW+dr+++ +SaWr 88990 309 DKWCKIMESIGFYNVALSPSAVHQSKLLLRLYQTDGYTLVEDKGCLLLGWQDRAIIGASAWR 370 ***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.003	1	350	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-132	4	370	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
GLQLIHMLLG CGEKIDQEDY IYAGNLLHQL KQLASPTGDS IHRVATHFTD ALYARLNGTG 60 YRSYTALRAY DPASLEEILG AYHILYQVCP YIKFAHFTSN QAIFEAFEGE QSVHIIDLEI 120 LQGYQWPAFM QALAARQGGA PHLRITGVGM PLEAVQETGK RLADLAATLR VPFEYHAVGE 180 RLEDLQSHML HRRHGEALAV NCIDRFHRLF TDDHLVVNPV VRILSMIREQ APRIVTLVEQ 240 EANHNTNSFL KRFLEAMHYY SAIFDSLEAT LPQVSPERAK VEQVVFSSEI MNIVACEGSQ 300 RIVRHEKVDK WCKIMESIGF YNVALSPSAV HQSKLLLRLY QTDGYTLVED KGCLLLGWQD 360 RAIIGASAWR C*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

GLQLIHMLLG CGEKIDQEDY IYAGNLLHQL KQLASPTGDS IHRVATHFTD ALYARLNGTG  60
YRSYTALRAY DPASLEEILG AYHILYQVCP YIKFAHFTSN QAIFEAFEGE QSVHIIDLEI  120
LQGYQWPAFM QALAARQGGA PHLRITGVGM PLEAVQETGK RLADLAATLR VPFEYHAVGE  180
RLEDLQSHML HRRHGEALAV NCIDRFHRLF TDDHLVVNPV VRILSMIREQ APRIVTLVEQ  240
EANHNTNSFL KRFLEAMHYY SAIFDSLEAT LPQVSPERAK VEQVVFSSEI MNIVACEGSQ  300
RIVRHEKVDK WCKIMESIGF YNVALSPSAV HQSKLLLRLY QTDGYTLVED KGCLLLGWQD  360
RAIIGASAWR C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-94	11	369	26	378	Protein SCARECROW
5b3h_A	2e-94	11	369	25	377	Protein SCARECROW
5b3h_D	2e-94	11	369	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002968015.2	0.0	DELLA protein RGL1
Swissprot	G7L166	1e-162	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	D8R962	0.0	D8R962_SELML; GRAS family protein (Fragment)
TrEMBL	D8T9W5	0.0	D8T9W5_SELML; Uncharacterized protein (Fragment)
STRING	EFJ06562	0.0	(Selaginella moellendorffii)
STRING	EFJ31362	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5366	13	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	9e-96	RGA-like 2

Link Out ? help Back to Top
Phytozome	88990
Entrez Gene	9631102

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]