PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 85851 | ||||||||
Common Name | MADS11-2, SELMODRAFT_451047 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 60aa MW: 6819.04 Da PI: 8.899 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 5.2e-13 | 14 | 45 | 6 | 37 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevav 37 ksnr+ tf kR g++KKA E+ +LC+ae + 85851 14 KSNRNATFRKRSCGLMKKADEIHILCGAELML 45 89**************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.23E-16 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.6 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.11E-13 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 3.0E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-12 | 14 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MGRCKIEIKY LTVKSNRNAT FRKRSCGLMK KADEIHILCG AELMLEMEPE GGTPRIYASE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002978231.1 | 1e-37 | developmental protein SEPALLATA 3 | ||||
TrEMBL | D8S478 | 2e-36 | D8S478_SELML; Type I MADS-domain transcription factor | ||||
STRING | EFJ20888 | 4e-37 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 2e-11 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | 85851 |
Entrez Gene | 9658163 |
Publications ? help Back to Top | |||
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