PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 83811
Common NameSELMODRAFT_449738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 473aa    MW: 52635.4 Da    PI: 5.0745
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
83811genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3911.3e-119974711374
   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svsel....ykal.ppsetsekn..sseelaalklfsevsPilkfshl 96 
            l++lLl+cAeav+ +d ++a +lL++l+++asp+gd+mqR++++f+e+L arla+ ++ +l    yk   +p ++++++  ++ +   ++l +e +P++ f+h+
  83811  97 LIQLLLACAEAVACRDVNQAATLLSQLQQMASPRGDSMQRVTSCFVEGLTARLAGlQSISLsgaaYKPAvAPPAARRSQipEALRDEGFNLVYEFCPYFSFGHF 200
            689***************************************************95333331111333312223333332222222333669************ PP

   GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
            +aN aIl+a+ege+rvHi+D+++s  lQWpaLlq LasRp+gpp s+RiTgv+    +++++l   ge L+++Ae+l+++fef++ v++++e+l+  +L+v+ g
  83811 201 AANAAILDAFEGESRVHIVDLGMSSALQWPALLQGLASRPGGPPeSIRITGVSC---DRSDKLFLAGEELSRLAESLELQFEFRA-VTQAVESLQRGMLDVRDG 300
            ****************************************99888********9...6899************************.799*************** PP

   GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
            Ea+a+n+++qlh +++es  + +   +vL+ + +lsPk++++veq+a hn++ Fl rf+eal+yysa+fd+++a lp++seer k+E+   ++ei+n+vaceg 
  83811 301 EAMAINSAFQLHCVVKESRRSLK---SVLQSIHELSPKILTLVEQDACHNGPFFLGRFIEALHYYSAIFDAVDAILPSDSEERLKIEQYHYAEEIKNIVACEGP 401
            ***************88777666...9***************************************************************************** PP

   GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
            +r+erhe++ +Wr+r+++aGF+p pl+     ++k+ l +++ s+gy++ ee+g++vlgWk++p+v++S Wr
  83811 402 DRVERHERADQWRRRMSRAGFQPKPLK--FLGEVKTWLGMYYpSEGYTLVEEKGCIVLGWKGKPIVAASTWR 471
            **************************7..57899*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.92371452IPR005202Transcription factor GRAS
PfamPF035144.5E-11797471IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MCSNDVFNPV QREDVLQDKI ELKESISALE SDGAVGLEFW RGLQHQQEQQ EQQEQQQQRH  60
AQDQSLFEQE QQQGSRAQPA AAQDHHESGD ANVGIRLIQL LLACAEAVAC RDVNQAATLL  120
SQLQQMASPR GDSMQRVTSC FVEGLTARLA GLQSISLSGA AYKPAVAPPA ARRSQIPEAL  180
RDEGFNLVYE FCPYFSFGHF AANAAILDAF EGESRVHIVD LGMSSALQWP ALLQGLASRP  240
GGPPESIRIT GVSCDRSDKL FLAGEELSRL AESLELQFEF RAVTQAVESL QRGMLDVRDG  300
EAMAINSAFQ LHCVVKESRR SLKSVLQSIH ELSPKILTLV EQDACHNGPF FLGRFIEALH  360
YYSAIFDAVD AILPSDSEER LKIEQYHYAE EIKNIVACEG PDRVERHERA DQWRRRMSRA  420
GFQPKPLKFL GEVKTWLGMY YPSEGYTLVE EKGCIVLGWK GKPIVAASTW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-7210447025377Protein SCARECROW
5b3h_D3e-7210447025377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965807.20.0scarecrow-like protein 21
TrEMBLD8R3760.0D8R376_SELML; GRAS family protein
STRINGEFJ332270.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-84GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]