PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 83811 | ||||||||
Common Name | SELMODRAFT_449738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 52635.4 Da PI: 5.0745 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 391 | 1.3e-119 | 97 | 471 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svsel....ykal.ppsetsekn..sseelaalklfsevsPilkfshl 96 l++lLl+cAeav+ +d ++a +lL++l+++asp+gd+mqR++++f+e+L arla+ ++ +l yk +p ++++++ ++ + ++l +e +P++ f+h+ 83811 97 LIQLLLACAEAVACRDVNQAATLLSQLQQMASPRGDSMQRVTSCFVEGLTARLAGlQSISLsgaaYKPAvAPPAARRSQipEALRDEGFNLVYEFCPYFSFGHF 200 689***************************************************95333331111333312223333332222222333669************ PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 +aN aIl+a+ege+rvHi+D+++s lQWpaLlq LasRp+gpp s+RiTgv+ +++++l ge L+++Ae+l+++fef++ v++++e+l+ +L+v+ g 83811 201 AANAAILDAFEGESRVHIVDLGMSSALQWPALLQGLASRPGGPPeSIRITGVSC---DRSDKLFLAGEELSRLAESLELQFEFRA-VTQAVESLQRGMLDVRDG 300 ****************************************99888********9...6899************************.799*************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 Ea+a+n+++qlh +++es + + +vL+ + +lsPk++++veq+a hn++ Fl rf+eal+yysa+fd+++a lp++seer k+E+ ++ei+n+vaceg 83811 301 EAMAINSAFQLHCVVKESRRSLK---SVLQSIHELSPKILTLVEQDACHNGPFFLGRFIEALHYYSAIFDAVDAILPSDSEERLKIEQYHYAEEIKNIVACEGP 401 ***************88777666...9***************************************************************************** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+erhe++ +Wr+r+++aGF+p pl+ ++k+ l +++ s+gy++ ee+g++vlgWk++p+v++S Wr 83811 402 DRVERHERADQWRRRMSRAGFQPKPLK--FLGEVKTWLGMYYpSEGYTLVEEKGCIVLGWKGKPIVAASTWR 471 **************************7..57899*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.923 | 71 | 452 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-117 | 97 | 471 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MCSNDVFNPV QREDVLQDKI ELKESISALE SDGAVGLEFW RGLQHQQEQQ EQQEQQQQRH 60 AQDQSLFEQE QQQGSRAQPA AAQDHHESGD ANVGIRLIQL LLACAEAVAC RDVNQAATLL 120 SQLQQMASPR GDSMQRVTSC FVEGLTARLA GLQSISLSGA AYKPAVAPPA ARRSQIPEAL 180 RDEGFNLVYE FCPYFSFGHF AANAAILDAF EGESRVHIVD LGMSSALQWP ALLQGLASRP 240 GGPPESIRIT GVSCDRSDKL FLAGEELSRL AESLELQFEF RAVTQAVESL QRGMLDVRDG 300 EAMAINSAFQ LHCVVKESRR SLKSVLQSIH ELSPKILTLV EQDACHNGPF FLGRFIEALH 360 YYSAIFDAVD AILPSDSEER LKIEQYHYAE EIKNIVACEG PDRVERHERA DQWRRRMSRA 420 GFQPKPLKFL GEVKTWLGMY YPSEGYTLVE EKGCIVLGWK GKPIVAASTW RC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-72 | 104 | 470 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-72 | 104 | 470 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002965807.2 | 0.0 | scarecrow-like protein 21 | ||||
TrEMBL | D8R376 | 0.0 | D8R376_SELML; GRAS family protein | ||||
STRING | EFJ33227 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7052 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 3e-84 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 83811 |
Entrez Gene | 9634254 |
Publications ? help Back to Top | |||
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