PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 83123
Common NameSELMODRAFT_450231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 295aa    MW: 34052.4 Da    PI: 7.9385
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
83123genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS175.83.3e-54428389374
   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
            P l+ +   aNq+Ilea  g++rvHi+D++i +G QWp+L++aL++R+egpp ++iTg++ p+     +le+tg+rL ++Ae++g+++ef+ +++ ++e+ +++
  83123   4 PSLRATERFANQMILEACRGAKRVHIVDYGILYGDQWPSLIKALSERAEGPPLFKITGIDFPS---LVNLEKTGNRLVDYAESCGMHLEFHSIATAAWESAQPR 104
            677777889****************************************************65...899***********************988899998776 PP

   GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgrei 294
                   E l Vn++l++ ++  e++ ++s+r+ + + + s +P ++  +   a+++s+ F +rf  a + + a ++s+e+++      + +     +++++ +
  83123 105 YH--LFSELLFVNCQLRMRHIR-EDGIIDSPRKLFFEKILSFKPVMFFQSVVHAEMGSPFFIHRFDGAWRSFLARLESFEETMKLGLidQSQLDFMDKFIEKCA 205
            43..238*************96.9999**********************99****************************88865544435555555555***** PP

   GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
            + ++ac g++r+er  ++++W +  ++  F+++p+s++a + + ++ + ++   ++   ++++l+lgWkd  L ++S+W+
  83123 206 MGAIACDGQNRVERISSYKTWDRLARKGQFGQLPVSKQAFEMVMSVWSGHE--NFTYGMDENWLLLGWKDVILNALSVWK 283
            ****************************************99999998888..59************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.2431265IPR005202Transcription factor GRAS
PfamPF035141.1E-514283IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNLPSLRATE RFANQMILEA CRGAKRVHIV DYGILYGDQW PSLIKALSER AEGPPLFKIT  60
GIDFPSLVNL EKTGNRLVDY AESCGMHLEF HSIATAAWES AQPRYHLFSE LLFVNCQLRM  120
RHIREDGIID SPRKLFFEKI LSFKPVMFFQ SVVHAEMGSP FFIHRFDGAW RSFLARLESF  180
EETMKLGLID QSQLDFMDKF IEKCAMGAIA CDGQNRVERI SSYKTWDRLA RKGQFGQLPV  240
SKQAFEMVMS VWSGHENFTY GMDENWLLLG WKDVILNALS VWKPIEKLPR FKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-201328397375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965007.10.0scarecrow-like protein 31
TrEMBLD8R1600.0D8R160_SELML; GRAS-family protein
STRINGEFJ338450.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.17e-49GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]