PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 81013 | ||||||||
Common Name | SELMODRAFT_81013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28648.6 Da PI: 9.7786 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 45 | 90 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + Er+RR+ +N+++++Lr+l+P++ K + a+i+ A++Y+k+L 81013 45 NHFATERQRREYLNEKYQTLRSLVPNP-----SKADRASIVADAIDYVKEL 90 7*************************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.43E-10 | 40 | 95 | No hit | No description |
SuperFamily | SSF47459 | 1.14E-16 | 40 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.707 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 45 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-11 | 45 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-12 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MRPPGLLDYE DRDNSAGHEE RRLFPSLFEK KDFTFAKGAE SRGINHFATE RQRREYLNEK 60 YQTLRSLVPN PSKADRASIV ADAIDYVKEL KRTVQELQLL VEEKRRGSNK RCKASPDDPS 120 ATDVESTTAM QQPGGTRVSK ETTFLGDGSQ LRSSWLQRTS QMGTHIDVRI VDDEVNIKLT 180 QRRRRNYVLL AVLRSLDELR LDLLHANGAS IGEHHIFMFN TKVVLAPSSF LLSLFLFYFF 240 LFSSALILPR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002964440.2 | 1e-162 | transcription factor bHLH91 | ||||
Swissprot | Q7X8R0 | 8e-52 | EAT1_ORYSJ; Transcription factor EAT1 | ||||
TrEMBL | D8QZC5 | 0.0 | D8QZC5_SELML; Uncharacterized protein | ||||
STRING | EFJ34773 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2659 | 14 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 81013 |
Entrez Gene | 9654524 |
Publications ? help Back to Top | |||
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