PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

80549

Common Name

SELMODRAFT_450948

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 373aa MW: 41630.5 Da PI: 8.438

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
80549	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268	3.2e-82	6	371	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106 +++c ea++++ +++a +l+++l++ +sp+g++++Rla+yf eAL ar ++++s ly+ l s+ + +e l+ + + e+sP + + + +Nq+Il+++ 80549 6 ASIVKCCEAIAANATTQAYELVSELRDKSSPTGTTVERLAFYFSEALVARSTGTGSLLYNGLIKSKRP---IDEILQLFATVAETSPGFGLPIFFTNQTILDET 106 6789******************************************************99888888...8999999999******************* PP GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210 +++ rvH++Df+i+ G W++L++ +++R++gpp++R+T+v++p+++ e +g +L ++A++lgvpfef+ +v+ +++++ +++L ++p+++l+V + ++l 80549 107 SSAARVHVVDFGIGPGYRWLCLIKDFSERSGGPPHFRVTAVDRPSNSLLYPREDVGAKLGRYASSLGVPFEFHSVVTADWDSIGPSQLMIQPDDVLIVTSFHKL 210 *****************************************9999999*******************99*********************** PP GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhet 311 +l +++++++L+ + ++Pk++ + + ns+s+++r ea+e+y+ +f++++a+l++ er+++E+ g e+ n +aceg+er+er e 80549 211 RELS------DDPKRRFLRNIHAMEPKLFLNAAFPpVGFNSPSLVARAREAFEFYAGMFEAIAASLAESRfaGERRFLEQL-RGLELLNTLACEGEERVERPEG 307 8......444578**********9988765888***********************9998989**98.9***************** PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++W+e ++ aGF+ ++++ ++++ ak +l++++ ++y+v + ++++l +++ L+++S W+ 80549 308 YKQWQELMRGAGFEGYEIKRHVYAGAKKMLATYSnAREYSVGRSGNWILLRRNRQVLIAISNWT 371 ******************************999************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.36	1	350	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-79	6	371	IPR005202	Transcription factor GRAS
Gene3D	G3DSA:3.40.50.150	9.8E-5	110	242	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	9.8E-5	277	328	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MRYLKASIVK CCEAIAANAT TQAYELVSEL RDKSSPTGTT VERLAFYFSE ALVARSTGTG 60 SLLYNGLIKS KRPIDEILQL FATVAETSPG FGLPIFFTNQ TILDETSSAA RVHVVDFGIG 120 PGYRWLCLIK DFSERSGGPP HFRVTAVDRP SNSLLYPRED VGAKLGRYAS SLGVPFEFHS 180 VVTADWDSIG PSQLMIQPDD VLIVTSFHKL RELSDDPKRR FLRNIHAMEP KLFLNAAFPP 240 VGFNSPSLVA RAREAFEFYA GMFEAIAASL AESRFAGERR FLEQLRGLEL LNTLACEGEE 300 RVERPEGYKQ WQELMRGAGF EGYEIKRHVY AGAKKMLATY SNAREYSVGR SGNWILLRRN 360 RQVLIAISNW TC*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MRYLKASIVK CCEAIAANAT TQAYELVSEL RDKSSPTGTT VERLAFYFSE ALVARSTGTG  60
SLLYNGLIKS KRPIDEILQL FATVAETSPG FGLPIFFTNQ TILDETSSAA RVHVVDFGIG  120
PGYRWLCLIK DFSERSGGPP HFRVTAVDRP SNSLLYPRED VGAKLGRYAS SLGVPFEFHS  180
VVTADWDSIG PSQLMIQPDD VLIVTSFHKL RELSDDPKRR FLRNIHAMEP KLFLNAAFPP  240
VGFNSPSLVA RAREAFEFYA GMFEAIAASL AESRFAGERR FLEQLRGLEL LNTLACEGEE  300
RVERPEGYKQ WQELMRGAGF EGYEIKRHVY AGAKKMLATY SNAREYSVGR SGNWILLRRN  360
RQVLIAISNW TC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-33	7	370	7	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963650.1	0.0	scarecrow-like protein 31
TrEMBL	D8QY00	0.0	D8QY00_SELML; GRAS family protein
STRING	EFJ35521	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	7e-62	GRAS family protein

Link Out ? help Back to Top
Phytozome	80549
Entrez Gene	9655179

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]