PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

79941

Common Name

SELMODRAFT_79941

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 308aa MW: 36293.6 Da PI: 6.0515

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
79941	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.8	5.8e-23	54	136	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W +e+++ i++r e e+++ ++k++k+lWe ++ +m+++gf+rs+ qCk+kw+nl +ryk + +e + + ++cp++++l+a 79941 54 QWGFHETKEFIAIRAEFEREFTQTKRNKTLWELIAGRMKDKGFRRSADQCKCKWKNLVNRYKGKEISEPD----NGRQCPFYEELDA 136 69**********************************************************99988887....4678****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.841	47	111	IPR017877	Myb-like domain
CDD	cd12203	4.47E-24	53	118	No hit	No description
Pfam	PF13837	8.7E-22	54	137	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSSLLGDGIV IPLQQPPAIA VGGGILDGGG GGGGGGGGAA MMRGGRRKEE RIPQWGFHET 60 KEFIAIRAEF EREFTQTKRN KTLWELIAGR MKDKGFRRSA DQCKCKWKNL VNRYKGKEIS 120 EPDNGRQCPF YEELDAIFKE RSKSMLMLES DGLRPKKRLK KLKGLLSDEE TDDEDDDEES 180 DDDNRNLQQL QPFQHHHQEQ QQQQQHQLQQ QIQSRASSMQ EVLEEFFQQQ QRNEEQWRVS 240 LEQREMERRA REHEWRECME KLEQERALRE QAWWEREEQR RLRDEVRSRK RDELVEAVLR 300 KVIRDDC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024535184.1	1e-148	trihelix transcription factor GT-3a
TrEMBL	D8QWH4	0.0	D8QWH4_SELML; Uncharacterized protein
STRING	EFJ35238	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	6e-35	Trihelix family protein

Link Out ? help Back to Top
Phytozome	79941
Entrez Gene	9643577

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]