PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 74197
Common NameSELMODRAFT_74197
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 632aa    MW: 70905.1 Da    PI: 6.6359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
74197genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07448488340
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +WT eE +ll +a +++++g   +W+ +++++g+gR+ +++
            74197 448 PWTREEVDLLRKAMAKYPKGtsqRWEVVSNYIGTGRSVEEI 488
                      8************************************9876 PP
2Myb_DNA-binding23.11.7e-07577620344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      +W++  ++ lv+a k ++++   +W++Ia+ ++ g++  qc  ++
            74197 577 AWSETQELALVKALKTFPKEtaqRWERIAAAVP-GKSKAQCFKKF 620
                      8********************************.*******7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1107.7E-2284178IPR001623DnaJ domain
SuperFamilySSF465652.49E-2185166IPR001623DnaJ domain
SMARTSM002711.8E-1787162IPR001623DnaJ domain
PfamPF002261.7E-1888167IPR001623DnaJ domain
PROSITE profilePS5007618.89788170IPR001623DnaJ domain
CDDcd062571.01E-1388159IPR001623DnaJ domain
PRINTSPR006251.3E-893111IPR001623DnaJ domain
PRINTSPR006251.3E-8111126IPR001623DnaJ domain
PRINTSPR006251.3E-8142162IPR001623DnaJ domain
PROSITE patternPS006360147166IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.5E-5440489IPR009057Homeodomain-like
PROSITE profilePS500906.493441496IPR017877Myb-like domain
SMARTSM007174.6E-6445498IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-8447490IPR009057Homeodomain-like
PfamPF002492.8E-6448488IPR001005SANT/Myb domain
CDDcd001671.65E-4448488No hitNo description
PROSITE profilePS512939.396573628IPR017884SANT domain
SMARTSM007171.2E-6574626IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-8576622IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-4576623IPR009057Homeodomain-like
PfamPF002492.4E-6577620IPR001005SANT/Myb domain
CDDcd001675.68E-5577620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MPALLKYSAE LRDGIPVLYG SNGFPLKCSR FEPAGHSFHA AALKLLGLGA AIAEDDDDDD  60
EILGSKNEFG DSYYAKGKKK VGGSEQQDHY ALLGLSHLRF LASEEQIRKA YREVALKHHP  120
DKQAALILLE DGEDAREAKK QEIDAHFKAI QEAYEVLVDP VKRRAYDSVD EFDDEVPSDC  180
AVESFFQVYG PVFLRNGRWS VIQPVPELGQ MTSSMAEVDK FYDFWFSFKS WREFPHADEF  240
EVEQAEGREH RRWMERQNLK LREKAKKEES ARVRTLVENA YKRDPRIIRR REDEKAAKLM  300
KKQAKLLAKK EKEDQAAKAL EEERLRKEEE EKRLAEEAAA QKKLKEKEKK LVRKERSRLR  360
SLAAGVVSSK AFATKEEDVE ALCSKLDLAQ LKALCEKLEG CGGSMTDVGS ALSAALDGAE  420
GESNDPADED KNAQAPVLME EKKEKERPWT REEVDLLRKA MAKYPKGTSQ RWEVVSNYIG  480
TGRSVEEILK AIKTVLLQKP DSSKAFDTFL QKRKAPSSIA SPLSTRAEEG TELPGQENGA  540
SAARVPESGE KEKDKEPSLA NGKTSVAEDG GGGEQDAWSE TQELALVKAL KTFPKETAQR  600
WERIAAAVPG KSKAQCFKKF AALRENFRSK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-2118528721123Zuotin
5dje_B4e-2118528721123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960380.10.0dnaJ homolog subfamily C member 2
TrEMBLD8QR500.0D8QR50_SELML; Uncharacterized protein
STRINGEFJ379190.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.12e-93DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]