PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 72880 | ||||||||
Common Name | SELMODRAFT_72880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 65aa MW: 7427.43 Da PI: 11.323 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.1 | 1.6e-21 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+tae+Aa+a+++a+ +l+g 72880 7 HFRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTAEQAARAYDKAAFSLRG 56 69*******.**********883....5*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.64E-26 | 6 | 64 | No hit | No description |
PROSITE profile | PS51032 | 23.42 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-23 | 7 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-32 | 7 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-33 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 7 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
GGGAEQHFRG VRKRPWGRYA AEIRDPWKKT RVWLGTFDTA EQAARAYDKA AFSLRGVKAK 60 TNFPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 6 | 65 | 4 | 64 | ATERF1 |
3gcc_A | 1e-23 | 6 | 65 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024534311.1 | 1e-40 | ethylene-responsive transcription factor 9-like | ||||
Swissprot | Q94ID6 | 1e-30 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
Swissprot | Q9FE67 | 1e-30 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | D8RRB9 | 2e-39 | D8RRB9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ25217 | 3e-40 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-33 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | 72880 |
Entrez Gene | 9642623 |
Publications ? help Back to Top | |||
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