PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 69621 | ||||||||
Common Name | SELMODRAFT_49261, SELMODRAFT_69621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LBD | ||||||||
Protein Properties | Length: 102aa MW: 11685.5 Da PI: 8.3727 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.6 | 1e-38 | 4 | 101 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkC+ dC+lapyfpae +++f ++lFG+sn+l++l+++++ ++e++m+sl+yeAe+r +dPv+G++g+i++l+++++ l+ el+l++ 69621 4 ACAACKFQRRKCPVDCPLAPYFPAEANQRFLSCKRLFGVSNMLRFLRDADPADKEETMKSLIYEAEVRDKDPVHGCYGIISQLTERVRGLQRELELTR 101 7********************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.302 | 3 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.7E-38 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
TSQACAACKF QRRKCPVDCP LAPYFPAEAN QRFLSCKRLF GVSNMLRFLR DADPADKEET 60 MKSLIYEAEV RDKDPVHGCY GIISQLTERV RGLQRELELT RS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-28 | 5 | 102 | 12 | 109 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-28 | 5 | 102 | 12 | 109 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002986599.2 | 6e-72 | LOB domain-containing protein 22 | ||||
Refseq | XP_024525621.1 | 6e-72 | LOB domain-containing protein 22 | ||||
Swissprot | Q9STS6 | 3e-31 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | D8R2Q3 | 1e-69 | D8R2Q3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ12456 | 2e-70 | (Selaginella moellendorffii) | ||||
STRING | EFJ34109 | 2e-70 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-33 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | 69621 |
Entrez Gene | 9658762 | 9659085 |
Publications ? help Back to Top | |||
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