PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 68508 | ||||||||
Common Name | SELMODRAFT_48444, SELMODRAFT_68508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 184aa MW: 20639.4 Da PI: 9.5958 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.8 | 5.2e-33 | 1 | 55 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa +Ggha+DGCgEfmps geegt+++lkC+AC+CHRnFHRreve 68508 1 VRYRECLKNHAAGIGGHALDGCGEFMPS-GEEGTIESLKCSACDCHRNFHRREVEG 55 69*************************9.999*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-30 | 1 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 2 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-32 | 2 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.068 | 3 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.65E-19 | 115 | 183 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-30 | 119 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.5E-27 | 122 | 179 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
VRYRECLKNH AAGIGGHALD GCGEFMPSGE EGTIESLKCS ACDCHRNFHR REVEGAKDVM 60 SKKKPSSVLP LQQHGSPLGS MARSPGALVA LSNSDQSDDH DLGAQHQTTY SLAHHLIPSA 120 IKKRFRTKFT NEQKEKMFHF AHRLGWKIQK HDEGEVQQFC ADVGVKRHVL KVWMHNNKNT 180 FGKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-27 | 123 | 180 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002965557.2 | 1e-139 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024543836.1 | 1e-139 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6YXH5 | 2e-62 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | D8R3P4 | 1e-136 | D8R3P4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ15852 | 1e-136 | (Selaginella moellendorffii) | ||||
STRING | EFJ32977 | 1e-136 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-62 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | 68508 |
Entrez Gene | 9634609 | 9654153 |
Publications ? help Back to Top | |||
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