PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 68039 | ||||||||
Common Name | SELMODRAFT_68039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Trihelix | ||||||||
Protein Properties | Length: 222aa MW: 24795.2 Da PI: 10.5252 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.9 | 1.9e-16 | 9 | 100 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ +laLi+a e+ +l+rg+lk+++W+ev++ + +++ +s +qCk++++ l+k+yk +k++ + ++s s++p+f +l+ 68039 9 WTEGATLALIDAWGERYLHLNRGNLKQKHWREVADEVtkrscldesSSGRSGKSDVQCKNRLDTLKKKYKIEKARLAS--EGSPSKWPFFVKLD 100 *******************************************99877778899***********************9..688889****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.8E-25 | 7 | 102 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
PGHGRDDAWT EGATLALIDA WGERYLHLNR GNLKQKHWRE VADEVTKRSC LDESSSGRSG 60 KSDVQCKNRL DTLKKKYKIE KARLASEGSP SKWPFFVKLD ELIGPSKKGK KRSTPPPSNN 120 GIAPAAAAAA ALTATPNNGN ATAANEGRAS SSKRRKVEGS FKDLARAIIK FGEVYERIES 180 AKQQQLMDLE RQRMEFTKDL ELQRMQLFMQ TQVELAKMKH GK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024531829.1 | 1e-145 | trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 4e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | D8RJB4 | 1e-163 | D8RJB4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ27884 | 1e-164 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 2e-45 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | 68039 |
Entrez Gene | 9641830 |
Publications ? help Back to Top | |||
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