PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

64559

Common Name

SELMODRAFT_450177

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 375aa MW: 42174.7 Da PI: 9.3535

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
64559	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	272	2e-83	10	372	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 + lL++cA+av++gd ++a al++ ++ +s + + R +++f+ AL arl + + ++y+a++ + t++ + +++l++ P+lk+s+ aN+ I 64559 10 EYLLVRCAQAVAAGDSSRAFALVSDIKGAlwrSSGSMGCLCRTISFFVDALTARLEGFGAQVYAAMAKEVTRR-----QYLSVRLLN--LPCLKLSQRFANEHI 106 568*********************998774555558999******************9998888874.....444455665..6********** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206 le + g++rvHi+D++i++G+QWp L++aL++R++gpp+l+iTgv+ p+ +l etg++L +fA+++gvpfef +++++++e+ ++ ++E+l+Vn+ 64559 107 LELARGARRVHIVDYGIQYGFQWPYLIKALSQRSGGPPELKITGVDCPH---VVNLAETGRKLVEFARSCGVPFEFMAVASENWEKE---RIIRCKNEVLVVNS 204 ******************************************965...99********************977777766...4444468*** PP GRAS 207 vlqlhrllde.svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309 vl+l +l d+ +v+++++r+ +L + +l+P+++ +e ad++s+ Fl+rf +ale+y ++ +ea + + + e++ +++ +r+i+n+vaceg er+er 64559 205 VLRLRHLRDHgTVAVDNPREVFLGKICGLRPDLFLQTEISADMGSPLFLQRFKNALEFYKQKMEYFEAVA-EGKPEEHGFIQKVAARDIMNIVACEGLERVERA 307 ***9873567778*********************************************9995.5555555555555**************** PP GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ W +r ++aGF+ v+++e++++++++ k+ + + + ++++lgWk+ L+++SaWr 64559 308 ASYRVWDARAKRAGFEGVAVTEEIYDKVRSACGKFRNPNFGFARDGNWMLLGWKGTVLYAMSAWR 372 ********************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.502	1	352	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-81	10	372	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
KNSDSDGGLE YLLVRCAQAV AAGDSSRAFA LVSDIKGALW RSSGSMGCLC RTISFFVDAL 60 TARLEGFGAQ VYAAMAKEVT RRQYLSVRLL NLPCLKLSQR FANEHILELA RGARRVHIVD 120 YGIQYGFQWP YLIKALSQRS GGPPELKITG VDCPHVVNLA ETGRKLVEFA RSCGVPFEFM 180 AVASENWEKE RIIRCKNEVL VVNSVLRLRH LRDHGTVAVD NPREVFLGKI CGLRPDLFLQ 240 TEISADMGSP LFLQRFKNAL EFYKQKMEYF EAVAEGKPEE HGFIQKVAAR DIMNIVACEG 300 LERVERAASY RVWDARAKRA GFEGVAVTEE IYDKVRSACG KFRNPNFGFA RDGNWMLLGW 360 KGTVLYAMSA WRPKR

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

KNSDSDGGLE YLLVRCAQAV AAGDSSRAFA LVSDIKGALW RSSGSMGCLC RTISFFVDAL  60
TARLEGFGAQ VYAAMAKEVT RRQYLSVRLL NLPCLKLSQR FANEHILELA RGARRVHIVD  120
YGIQYGFQWP YLIKALSQRS GGPPELKITG VDCPHVVNLA ETGRKLVEFA RSCGVPFEFM  180
AVASENWEKE RIIRCKNEVL VVNSVLRLRH LRDHGTVAVD NPREVFLGKI CGLRPDLFLQ  240
TEISADMGSP LFLQRFKNAL EFYKQKMEYF EAVAEGKPEE HGFIQKVAAR DIMNIVACEG  300
LERVERAASY RVWDARAKRA GFEGVAVTEE IYDKVRSACG KFRNPNFGFA RDGNWMLLGW  360
KGTVLYAMSA WRPKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-33	15	374	24	380	Protein SCARECROW
5b3h_D	3e-33	15	374	24	380	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965370.1	0.0	scarecrow-like protein 31
Refseq	XP_024525353.1	0.0	scarecrow-like protein 31
TrEMBL	D8R161	0.0	D8R161_SELML; GRAS family protein
STRING	EFJ34208	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	8e-75	GRAS family protein

Link Out ? help Back to Top
Phytozome	64559
Entrez Gene	9659419

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]