PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

64241

Common Name

SELMODRAFT_450144, SHORTROOT_3

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 373aa MW: 42171.4 Da PI: 6.7264

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
64241	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	307.4	3.2e-94	9	373	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106 elL ecA+av+++d ++q l++ l+el+sp+g++ qRla+ f++AL a+l+r +s+ y++l + ++++++ ++ +++ f+e+sP+++++ ++aN aIlea+ 64241 9 ELLQECAKAVDEKDGPRVQYLMWVLNELSSPYGNTEQRLASAFLQALFAKLTRRGSQHYRSLCSAAAKSHSFASMKKMVLKFQELSPWMTVGMVAANGAILEAL 112 6899********************************************************8888886666666666666******************* PP GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206 ege+ vHi+D + + ++QWp+L++aLa R+e pp+lR+T++ ++ + s++ ++e+ +rL+kfA+ +g+pfef+vl+a ++e++++ +L+++++E+l+Vn 64241 113 EGERSVHIVDVSNTFCTQWPTLFEALAMRAEHPPHLRVTTLRLSSREeeesSEQVMREITHRLEKFARLMGIPFEFSVLAAVETEEIDPAMLETRSNEVLIVNA 216 ************************************9987666778899**********************999*****************9 PP GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 + ++ + + + l + ++Pkvv+vve e+d++s++Fl+rf+ea ++ys++f+sl++++pr+s er+++Er+ gr+iv ++ c + + + 64241 217 MNFFQHQR-HG-------RPLAVLARAVNPKVVIVVEDEVDLSSPQFLTRFAEAQRFYSVFFESLDSSFPRTSGERMMLERV-AGRRIVAALGCDDDP-AAGAR 310 98666654.22.......23444789***************************************************9.********999.89999 PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ekW+ ++++ F p pl++++++++++ll+++k g+ + + l+l+Wk+++ ++v++W+ 64241 311 PPEKWNLAMQREAFVPKPLKSEVVDDIQALLKRYK-PGWGLRRGDIGLFLTWKEENAIAVTVWK 373 9******************************.9999*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.784	1	354	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-91	9	373	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
SSSTNWAPEL LQECAKAVDE KDGPRVQYLM WVLNELSSPY GNTEQRLASA FLQALFAKLT 60 RRGSQHYRSL CSAAAKSHSF ASMKKMVLKF QELSPWMTVG MVAANGAILE ALEGERSVHI 120 VDVSNTFCTQ WPTLFEALAM RAEHPPHLRV TTLRLSSREE EESSEQVMRE ITHRLEKFAR 180 LMGIPFEFSV LAAVETEEID PAMLETRSNE VLIVNAMNFF QHQRHGRPLA VLARAVNPKV 240 VIVVEDEVDL SSPQFLTRFA EAQRFYSVFF ESLDSSFPRT SGERMMLERV AGRRIVAALG 300 CDDDPAAGAR PPEKWNLAMQ REAFVPKPLK SEVVDDIQAL LKRYKPGWGL RRGDIGLFLT 360 WKEENAIAVT VWK

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

SSSTNWAPEL LQECAKAVDE KDGPRVQYLM WVLNELSSPY GNTEQRLASA FLQALFAKLT  60
RRGSQHYRSL CSAAAKSHSF ASMKKMVLKF QELSPWMTVG MVAANGAILE ALEGERSVHI  120
VDVSNTFCTQ WPTLFEALAM RAEHPPHLRV TTLRLSSREE EESSEQVMRE ITHRLEKFAR  180
LMGIPFEFSV LAAVETEEID PAMLETRSNE VLIVNAMNFF QHQRHGRPLA VLARAVNPKV  240
VIVVEDEVDL SSPQFLTRFA EAQRFYSVFF ESLDSSFPRT SGERMMLERV AGRRIVAALG  300
CDDDPAAGAR PPEKWNLAMQ REAFVPKPLK SEVVDDIQAL LKRYKPGWGL RRGDIGLFLT  360
WKEENAIAVT VWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	1e-109	1	373	27	419	Protein SHORT-ROOT
5b3h_E	1e-109	1	373	27	419	Protein SHORT-ROOT
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY877259	1e-163	Selaginella moellendorffii shortroot-like gene, partial sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963449.1	0.0	protein SHORT-ROOT
TrEMBL	D8QWZ5	0.0	D8QWZ5_SELML; GRAS family protein
STRING	EFJ35320	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2755	13	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	1e-107	GRAS family protein

Link Out ? help Back to Top
Phytozome	64241
Entrez Gene	9655446

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]