PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 62212 | ||||||||
Common Name | SELMODRAFT_62212, SELMODRAFT_62214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 591aa MW: 63541.4 Da PI: 7.1424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.7e-09 | 249 | 269 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd+C +aHg 62212 249 PCPDFRK-GACRRGDTCEYAHG 269 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 3.08E-12 | 1 | 118 | No hit | No description |
SuperFamily | SSF48403 | 8.08E-14 | 4 | 121 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.2E-14 | 4 | 122 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 6.6E-8 | 5 | 108 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.001 | 43 | 73 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.106 | 43 | 123 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.286 | 78 | 113 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.8 | 78 | 110 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 6.3E-6 | 244 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-6 | 249 | 269 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 249 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 249 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 44 | 279 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 591 aa Download sequence Send to blast |
LLELAANNDL ETFRRVVEEG GMDLDEPDSW YLRKIGSTKM ATEKRSPLMI AALYGSIDVL 60 SYILKSGKVD VNKFCGEDEV TALHCAAAGG SSRGVDAVKL LLSGGANSSL MDAYGRRPAQ 120 VIAVPLKLRS TKSELEKMLS ATGFVSMSSM SSVCSSPDSY SPVFSPQFPS SPKSAENPSD 180 EKTKDYPVDP SLPDIKNSIY TTDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 240 RRFHYSCVPC PDFRKGACRR GDTCEYAHGV FECWLHPAQY RTRLCKDGTS CSRRVCFFAH 300 TSEEMRPLFV SMGSAVPSPR ASSPLDAGSV SPPLSSTSQS PVIMVPPFSP SNASGSGLST 360 PPLSPSGGGS WSQPTVPTLH LPGGAGLQAS RLRAALSARD IPVEGADYDG HLAPELSSMS 420 RQSSLLSSSA RMHKFGNLGL SIPSTSLQDL FSAEVSPLSA VHQSQLTPQE HSLLSQQLHS 480 QLQLQQLLSP LCSDGTDLST STAAEVLAAG RKASAFAQRD RGSWSMKEVS GSSLPSASWS 540 DWGSPTGKPD WGIQGQDLGK FRKSASFATH GGPEPDLSWV QTLVKDGPVE T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024531811.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_024531812.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_024531813.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_024540335.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_024540340.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 1e-179 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | D8QRK0 | 0.0 | D8QRK0_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ27881 | 0.0 | (Selaginella moellendorffii) | ||||
STRING | EFJ36789 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-142 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | 62212 |
Entrez Gene | 9630448 | 9642519 |
Publications ? help Back to Top | |||
---|---|---|---|
|