PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 59725 | ||||||||
Common Name | DUO1A-1, DUO1A-2, SELMODRAFT_116971, SELMODRAFT_118852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB | ||||||||
Protein Properties | Length: 100aa MW: 11624.5 Da PI: 10.1142 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 3 | 48 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde+lv++v+q+G+++W++I ++ + Rt+k+c++rw + 59725 3 KGPWMPEEDEILVEYVRQYGPRDWSSIRSKGLLPRTGKSCRLRWVN 48 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 59 | 98 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE++l v+ +lG++ W++Ia++++ gRt++++k++w 59725 59 KFSPEEEKLVVEMQSKLGNK-WAKIASCLP-GRTDNDVKNFW 98 79******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 1 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.518 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-12 | 2 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-29 | 2 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.16E-11 | 5 | 50 | No hit | No description |
Pfam | PF13921 | 1.2E-14 | 6 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 52 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.394 | 55 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-8 | 56 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-10 | 59 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
LRKGPWMPEE DEILVEYVRQ YGPRDWSSIR SKGLLPRTGK SCRLRWVNKL KPDLKSGCKF 60 SPEEEKLVVE MQSKLGNKWA KIASCLPGRT DNDVKNFWST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-30 | 1 | 100 | 25 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024544498.1 | 3e-64 | transcription factor MYB63 | ||||
Swissprot | Q0JB89 | 7e-54 | MYB58_ORYSJ; Probable transcription factor MYB58 | ||||
TrEMBL | D8SHC2 | 3e-67 | D8SHC2_SELML; Uncharacterized protein DUO1A-1 | ||||
STRING | EFJ15227 | 5e-68 | (Selaginella moellendorffii) | ||||
STRING | EFJ15980 | 5e-68 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 6e-55 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | 59725 |
Entrez Gene | 9651191 | 9662078 |
Publications ? help Back to Top | |||
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