PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 59069 | ||||||||
Common Name | SELMODRAFT_59069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | SRS | ||||||||
Protein Properties | Length: 123aa MW: 13259.1 Da PI: 9.8167 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 102.3 | 8.6e-32 | 2 | 59 | 6 | 63 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasska 63 a+C++CGnqakkdC+++RCRtCCksr++dC+thvkstWvpaakrrerq+ +aaa + 59069 2 ATCKECGNQAKKDCQFQRCRTCCKSRNYDCSTHVKSTWVPAAKRRERQALEAAAIAAG 59 68*********************************************99998875543 PP | |||||||
2 | DUF702 | 69.5 | 1.1e-21 | 81 | 123 | 110 | 152 |
DUF702 110 sseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 ++a+f+cv+v++++dge+e+aYq++v+igGhvfkG+LydqG+ 59069 81 AAQALFKCVKVTGIEDGENEYAYQATVKIGGHVFKGVLYDQGV 123 689**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.6E-28 | 2 | 59 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.1E-26 | 3 | 45 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 5.2E-19 | 81 | 123 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 7.8E-26 | 81 | 123 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
GATCKECGNQ AKKDCQFQRC RTCCKSRNYD CSTHVKSTWV PAAKRRERQA LEAAAIAAGQ 60 PRPRSKRTRS LALGGGSSSA AAQALFKCVK VTGIEDGENE YAYQATVKIG GHVFKGVLYD 120 QGV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024534506.1 | 3e-74 | AT-rich interactive domain-containing protein 1B-like, partial | ||||
Swissprot | Q94CK9 | 5e-42 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | D8RSU7 | 5e-85 | D8RSU7_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ24923 | 8e-86 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 2e-33 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | 59069 |
Entrez Gene | 9656335 |
Publications ? help Back to Top | |||
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