PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 57652 | ||||||||
Common Name | SELMODRAFT_57652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 20095.4 Da PI: 7.482 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 62 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F + ++L H + H 57652 62 WRCGYCHKIFESEEYLDLHFDNrH 85 58**************99976655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 64 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
GDHGVQCSRA RSRTARHILE EYLLPFVENE NYALSPQCRL HASNDAFREQ EREKQFYHIH 60 DWRCGYCHKI FESEEYLDLH FDNRHSETLN VSRDNCLADV CGALHCDYME TKDKHKFSKN 120 KCSPSVDRNR HLCEKLANSC FPPQQGAQAT RLNDFFLRQF CDAHSCKPGK R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002974450.2 | 1e-126 | uncharacterized protein LOC9658392 | ||||
TrEMBL | D8RTG6 | 1e-125 | D8RTG6_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ24672 | 1e-125 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4846 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63280.1 | 2e-59 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 57652 |
Entrez Gene | 9658392 |
Publications ? help Back to Top | |||
---|---|---|---|
|