PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56382

Common Name

SELMODRAFT_453332, Sm_HAIRY_MERISTEM1

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 336aa MW: 36474.6 Da PI: 6.2449

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56382	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	288.5	1.8e-88	1	336	34	373
GRAS 34 dgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasR 135 +g+ +qRla+yf+eALaar+ ++ + + + ++ +t++ + ++ a++ f e+sP+l+f++l aNqaIlea++ge vHi+Dfd + G QW+aLl+ a 56382 1 QGKRIQRLAFYFKEALAARMIDHHPATTTTTttTSATTTPAEIFAKVRAYTSFCEISPLLRFAYLSANQAILEAIQGEASVHIVDFDPGFGSQWAALLEDVART 104 57899***************777766655213333444447788888999**********************************************99 PP GRAS 136 p..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf..efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 p ++p+lR+T vg+ + +l + e L++fA el+++ +f ++ + + ++++ L + gE ++Vn++++lhr l+ ++ +d+ +++v + s 56382 105 PaaLPQPRLRLTLVGP----DPARLGFVVESLREFAGELHLRHtpQFGLVQCAAAGEMTPPLLGLTDGEPVVVNFMFSLHRSLAARGG----TDAAVSAVMTAS 200 9666799*****....9**************99864489999999*************************944444....666***** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 P++v+++e+e+d n+++F +rf+e+l+yy+ ++dsl + + +vE+ +l++ i n+v+ ega+r+erhe+l++Wr+rl++ G++pvp++e a +qa++ 56382 201 PRLVTIAEEEVDDNDGKFQRRFVETLQYYAFVLDSLGPE---DGAGVLTVEKDILSPGIANAVSLEGARRTERHERLAQWRARLGRGGLEPVPMGEAARMQAEC 301 ********************************877...678899**************************************************** PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 l++ ++ ++ ++v ++g l+lgW+++pLv+vS+W 56382 302 LIKGHShGKNFEVCRDEGGLLLGWQGKPLVAVSSW 336 **9999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.538	1	316	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-86	1	336	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
QGKRIQRLAF YFKEALAARM IDHHPATTTT TTTTSATTTP AEIFAKVRAY TSFCEISPLL 60 RFAYLSANQA ILEAIQGEAS VHIVDFDPGF GSQWAALLED VARTPAALPQ PRLRLTLVGP 120 DPARLGFVVE SLREFAGELH LRHTPQFGLV QCAAAGEMTP PLLGLTDGEP VVVNFMFSLH 180 RSLAARGGTD AAVSAVMTAS PRLVTIAEEE VDDNDGKFQR RFVETLQYYA FVLDSLGPED 240 GAGVLTVEKD ILSPGIANAV SLEGARRTER HERLAQWRAR LGRGGLEPVP MGEAARMQAE 300 CLIKGHSHGK NFEVCRDEGG LLLGWQGKPL VAVSSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-39	2	336	37	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002976818.2	0.0	DELLA protein SLR1
TrEMBL	D8S0H1	0.0	D8S0H1_SELML; GRAS family protein
STRING	EFJ21928	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1251	15	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-53	RGA-like 1

Link Out ? help Back to Top
Phytozome	56382
Entrez Gene	9649936

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]