PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 49950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 60aa MW: 6947.9 Da PI: 11.5589 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 69.5 | 5.9e-22 | 4 | 54 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+taeeAa+a+++a+++l+g+ 49950 4 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDNAARALRGA 54 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.13E-25 | 3 | 60 | No hit | No description |
PROSITE profile | PS51032 | 22.642 | 4 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 4 | 60 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-29 | 4 | 60 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-32 | 4 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-15 | 4 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 5 | 16 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 27 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
KEAHFRGVRK RPWGRFAAEI RDPWKKTRVW LGTFDTAEEA ARAYDNAARA LRGAKAKTNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 1 | 60 | 2 | 62 | ATERF1 |
3gcc_A | 2e-21 | 1 | 60 | 2 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024520807.1 | 3e-35 | uncharacterized protein LOC112342754 | ||||
Swissprot | Q9FE67 | 8e-32 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | D8S1N7 | 1e-33 | D8S1N7_SELML; DNA-directed RNA polymerase subunit beta | ||||
TrEMBL | D8SX55 | 2e-34 | D8SX55_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ07624 | 3e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ11025 | 3e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ21736 | 2e-34 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-24 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | 49950 |
Publications ? help Back to Top | |||
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