PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

448754

Common Name

SELMODRAFT_448754

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 399aa MW: 43064.9 Da PI: 6.5492

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
448754	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.1	4e-12	162	238	2	70
trihelix 2 WtkqevlaLiearr........emeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+ Li+++r m + + ++W++++kkm++ g++r k C+ +w+nl + yk + + ++k 448754 162 WGDDETASLIDFKRedhlgkigAMRG-----SeemtlTATNRWKRIAKKMQAAGMQRDWKVCQTRWNNLCNNYKCVYNFQRK 238 ***********9544433322222.....134555899********************************88777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.526	154	226	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.0E-4	158	226	IPR009057	Homeodomain-like
Pfam	PF13837	2.1E-11	159	240	No hit	No description
CDD	cd12203	9.18E-19	161	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MVRVWGSGIQ RGGAARGVRS NRGGGAFGAG GRAPGPAVAR GGRLPQGRGH GDADLSNFGL 60 NQGGVGAGAQ GAIARGVGAR GAVAQGVGAS PPTASRTQLF SEFSSTTTNE FWFHNLEEQD 120 VAVEQEVEED DRGDEEEGDD DEEGEAGVHV VKKVRKKRRK NWGDDETASL IDFKREDHLG 180 KIGAMRGSEE MTLTATNRWK RIAKKMQAAG MQRDWKVCQT RWNNLCNNYK CVYNFQRKTG 240 NPDYFNEDAK RLMLVKLNLK VFPVEYFNIM DEFLAKQAST SPTFLADSDA PEEEAYEEDP 300 ADGVDPPGDA TQVPGSSGKR KNPKKAEKRM TTLLAEGNAL AAARNEQNLA WQKESIVCMK 360 ENSLAEKEKA ATATVLAGAI SNLASSIFNF LNGATSRS*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MVRVWGSGIQ RGGAARGVRS NRGGGAFGAG GRAPGPAVAR GGRLPQGRGH GDADLSNFGL  60
NQGGVGAGAQ GAIARGVGAR GAVAQGVGAS PPTASRTQLF SEFSSTTTNE FWFHNLEEQD  120
VAVEQEVEED DRGDEEEGDD DEEGEAGVHV VKKVRKKRRK NWGDDETASL IDFKREDHLG  180
KIGAMRGSEE MTLTATNRWK RIAKKMQAAG MQRDWKVCQT RWNNLCNNYK CVYNFQRKTG  240
NPDYFNEDAK RLMLVKLNLK VFPVEYFNIM DEFLAKQAST SPTFLADSDA PEEEAYEEDP  300
ADGVDPPGDA TQVPGSSGKR KNPKKAEKRM TTLLAEGNAL AAARNEQNLA WQKESIVCMK  360
ENSLAEKEKA ATATVLAGAI SNLASSIFNF LNGATSRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	KKVRKKRRK
2	155	159	KKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8T9Y2	0.0	D8T9Y2_SELML; Uncharacterized protein
STRING	EFJ06571	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	4e-06	Trihelix family protein

Link Out ? help Back to Top
Phytozome	448754
Entrez Gene	9662120

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]