PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 445783 | ||||||||
Common Name | SELMODRAFT_445783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 29613.3 Da PI: 7.4771 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.9e-09 | 21 | 70 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f+eL +l + ++K +Ka+iL + +k+L 445783 21 RKVHKADREKLRRDKLNEQFAELAAVLDPE----KPKQDKASILGDSLQAVKNL 70 5677889*****************999887....89********8777666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.92E-7 | 19 | 75 | No hit | No description |
SuperFamily | SSF47459 | 1.13E-10 | 20 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.474 | 20 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-10 | 21 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-5 | 26 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MTQEVCEQRP SGPAGTSLVS RKVHKADREK LRRDKLNEQF AELAAVLDPE KPKQDKASIL 60 GDSLQAVKNL RVEIKRLRIE RGTLFDESRD LKRERDDLEE EKAALEKQTD ELEVQVQQLF 120 RSAAAVPCFK QPAAPGPSPA FAAAATTLRP HVAPPLNTAN PFVYLTSPSS CMGRVERPCA 180 QYPVADFLSK VQSSHGFQPT GRGAPPLGPG SRRGDHHVQQ CCLGCRDGDS DDIQLHLGQP 240 PSRHEIDTDL HLQLSSSPSS SSAAKGASLC PS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002984127.1 | 0.0 | transcription factor bHLH121 | ||||
TrEMBL | D8SLD3 | 0.0 | D8SLD3_SELML; Uncharacterized protein | ||||
STRING | EFJ14637 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3401 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 8e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 445783 |
Entrez Gene | 9644913 |
Publications ? help Back to Top | |||
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