PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

444782

Common Name

SELMODRAFT_444782

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 444aa MW: 47604.2 Da PI: 6.5876

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
444782	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.7e-12	270	315	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P++ K +Ka++L + ++Y+k Lq 444782 270 HSIAERLRRERIAERMKSLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 315 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-17	263	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.346	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-16	267	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.24E-12	269	319	No hit	No description
Pfam	PF00010	4.9E-9	270	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MAHNLQEQQQ QQLVMDEMME QILSMPSWSD SGRVAGAAPW DSFSGGMAGL ETMVALLNTN 60 NTTTTSSSIN NGIISSSSLL DPGSLQVQDH GSTLLSQLKQ QQQQEHEHHH HLVHDSCRIS 120 SISSNKNNGD SSSPVFERSD STWCQQYASN LPLSFGKPGG GSGGDVLTEA QMLGKRIRDE 180 QQQQQQQAAS LMENLSAISG QDAGIFNTFG GHPGQTNLAR TKSGQACQGL RTEIQEVPPP 240 VSQQQPAAAI PGGAARPRVR ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNSNKTDK 300 ASMLDEIIDY VKFLQLQVKV LSMSRLGNAG AVMTDLPPED SNQFLAALGQ NGAQDGIALT 360 ERQVAKLMEE DMGSAMQYLQ NKGLCLMPIH LASNMSKTSN NSPPPPPPPL PPAQANKARK 420 GVTSSSSSVG KPSTVKNADI SES*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MAHNLQEQQQ QQLVMDEMME QILSMPSWSD SGRVAGAAPW DSFSGGMAGL ETMVALLNTN  60
NTTTTSSSIN NGIISSSSLL DPGSLQVQDH GSTLLSQLKQ QQQQEHEHHH HLVHDSCRIS  120
SISSNKNNGD SSSPVFERSD STWCQQYASN LPLSFGKPGG GSGGDVLTEA QMLGKRIRDE  180
QQQQQQQAAS LMENLSAISG QDAGIFNTFG GHPGQTNLAR TKSGQACQGL RTEIQEVPPP  240
VSQQQPAAAI PGGAARPRVR ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNSNKTDK  300
ASMLDEIIDY VKFLQLQVKV LSMSRLGNAG AVMTDLPPED SNQFLAALGQ NGAQDGIALT  360
ERQVAKLMEE DMGSAMQYLQ NKGLCLMPIH LASNMSKTSN NSPPPPPPPL PPAQANKARK  420
GVTSSSSSVG KPSTVKNADI SES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	279	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981234.1	0.0	uncharacterized protein LOC9658284
TrEMBL	D8SCY3	0.0	D8SCY3_SELML; Uncharacterized protein
STRING	EFJ17935	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-44	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	444782
Entrez Gene	9658284

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]