PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 443366 | ||||||||
Common Name | SELMODRAFT_420254, SELMODRAFT_443366 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 21331.7 Da PI: 10.4054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.6 | 4.2e-10 | 81 | 121 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV+++ +W A I++ +k+++lg+ t eeAa ++++a+ 443366 81 RGVYFKN--LKWQAAIKVG-----KKQVHLGTVNTQEEAAHLYDRAAY 121 9**9965..5********4.....6********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.9E-4 | 79 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-8 | 80 | 124 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-4 | 81 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-7 | 86 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVSIRKRKHL SEKCRLQQAS NKCSENVEPL ALAMYRPDGT DEYIGKPPPL AFKTPFKDKE 60 LKKRKLHRRK QVNNQEPCML RGVYFKNLKW QAAIKVGKKQ VHLGTVNTQE EAAHLYDRAA 120 YMCGREPNFQ LTDEEKQELQ SFEWEEFLAL TRKAIAHKKM QNKLEAQMRR RQAAMAVKTE 180 QS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 63 | DKELKKR |
2 | 58 | 64 | KELKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002976991.1 | 1e-135 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
Refseq | XP_002980728.1 | 1e-135 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
Swissprot | Q56XP9 | 6e-42 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | D8S0S4 | 1e-133 | D8S0S4_SELML; Uncharacterized protein | ||||
STRING | EFJ18379 | 1e-134 | (Selaginella moellendorffii) | ||||
STRING | EFJ22101 | 1e-134 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8022 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 443366 |
Entrez Gene | 9638517 | 9656574 |
Publications ? help Back to Top | |||
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