PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

442874

Common Name

SELMODRAFT_442874

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HRT-like

Protein Properties

Length: 685aa MW: 77049.2 Da PI: 10.3111

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
442874	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	24.1	6.3e-08	651	681	2	31
HRT-like 2 CGvile.dGsvCkrqPvkgRKRCeeHKGmRi 31 CGv + dG C+r+P gRKRC H mR+ 442874 651 CGVVSKvDGVGCTRTPRNGRKRCDLHRRMRV 681 9988755**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05542	1.6E-20	93	174	IPR008479	Protein of unknown function DUF760
Pfam	PF05542	1.0E-17	246	329	IPR008479	Protein of unknown function DUF760

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009570	Cellular Component	chloroplast stroma

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MACLQPACWL KPCVSSTSAS AISSLASWPD HNRAKQAWSS SRAFSAIGLW RSGRKHSSCA 60 AATSSASSGD ELTSSSASSA GNRSLSKTRR DMLLEYVQNV QPEFMELFIQ KAPQQVVEAM 120 RKTVTNMLGT LPPQFFEITI TTVAENLAQL MYSVLMTGYM FRNAQYRLEL QQSLEQAALP 180 APKDEKFGPE FESKVQKSQV QGSVLKWHKE DGPVAMDAVE YIEFLESEVE KLQQQLERGK 240 VSGQNELLDY LKNLEPKNLQ ELTTSAGEDA VEAMNTFVQR LIRISDAAML KRTATETSAK 300 ELARLLYWLM VVGYSIRNIE VRYDMERILG IPAKHPELPP GETIGRSMAS PCRMRREECF 360 AVKHDRYFTR WKILIGHSDW RDSVDSPSGS RYRLHNLPSK SAVRPGIYEL GIVRPCSSSR 420 KRKKKKRLHR RDVVAVYLGQ AENVRQRLQS YGQGGSHLEG WTGLEKWLPE KRVLTQIFRQ 480 GPRLFSEIFA RGYSLAFRWS ATGSKESALA AEKKLLHVFD YAWNKGANGA RRSLDVLTKL 540 EMQSNVVCGT RSSIATRLGC ARIFERRVGV RVELSKPKDR SEARSFRDVI RGFLGLSIDG 600 HEDHRKKEGD GVRPDDARKT SSSRKDCKVR IERAGTGKLY GEVTGENGLK CGVVSKVDGV 660 GCTRTPRNGR KRCDLHRRMR VIKI*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MACLQPACWL KPCVSSTSAS AISSLASWPD HNRAKQAWSS SRAFSAIGLW RSGRKHSSCA  60
AATSSASSGD ELTSSSASSA GNRSLSKTRR DMLLEYVQNV QPEFMELFIQ KAPQQVVEAM  120
RKTVTNMLGT LPPQFFEITI TTVAENLAQL MYSVLMTGYM FRNAQYRLEL QQSLEQAALP  180
APKDEKFGPE FESKVQKSQV QGSVLKWHKE DGPVAMDAVE YIEFLESEVE KLQQQLERGK  240
VSGQNELLDY LKNLEPKNLQ ELTTSAGEDA VEAMNTFVQR LIRISDAAML KRTATETSAK  300
ELARLLYWLM VVGYSIRNIE VRYDMERILG IPAKHPELPP GETIGRSMAS PCRMRREECF  360
AVKHDRYFTR WKILIGHSDW RDSVDSPSGS RYRLHNLPSK SAVRPGIYEL GIVRPCSSSR  420
KRKKKKRLHR RDVVAVYLGQ AENVRQRLQS YGQGGSHLEG WTGLEKWLPE KRVLTQIFRQ  480
GPRLFSEIFA RGYSLAFRWS ATGSKESALA AEKKLLHVFD YAWNKGANGA RRSLDVLTKL  540
EMQSNVVCGT RSSIATRLGC ARIFERRVGV RVELSKPKDR SEARSFRDVI RGFLGLSIDG  600
HEDHRKKEGD GVRPDDARKT SSSRKDCKVR IERAGTGKLY GEVTGENGLK CGVVSKVDGV  660
GCTRTPRNGR KRCDLHRRMR VIKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	423	RKRKK
2	420	426	KRKKKKR
3	421	426	RKKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024536269.1	0.0	uncharacterized protein LOC9630638 isoform X2
TrEMBL	D8RWT9	0.0	D8RWT9_SELML; Uncharacterized protein
STRING	EFJ23149	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-44	effector of transcription2

Link Out ? help Back to Top
Phytozome	442874
Entrez Gene	9630638

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]