PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

442062

Common Name

SELMODRAFT_416566, SELMODRAFT_442062

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 309aa MW: 33177.5 Da PI: 5.4257

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
442062	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.2	4.3e-29	71	121	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWtpeLH+rF+eav+qLGGs+kAtPk +l lm+v+gLt++h+kSHLQ 442062 71 KQRLRWTPELHDRFMEAVNQLGGSDKATPKGVLGLMGVQGLTIYHIKSHLQ 121 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.322	68	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-27	69	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-15	70	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-22	71	121	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-8	73	121	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-24	161	207	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MMLQPKNSPS SVVAAAPVAP QVPSSPAAAG DLVCFSTPPP AAAVPSTPAA ALANNVASTP 60 AASSGNVASV KQRLRWTPEL HDRFMEAVNQ LGGSDKATPK GVLGLMGVQG LTIYHIKSHL 120 QARILNLLLP KFRLAKYLPD TLGDGELEKG RDLEADSRGR QLSEALRMQM EVQKRLHEQL 180 EVQRHLQLRI EAQGKYLQRI LEEQQKMNKL LRGDDGLPLS PIKLDADPDP EPDPAIDLTD 240 DSAEDEEHKP TTADVILVDE EKLAGGSLAA AAVDSGEEPH AKRKKVDDLQ HSQHKDNGAE 300 GDAKENGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-22	71	137	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	71	137	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	71	137	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	71	137	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024533998.1	0.0	myb family transcription factor PHL7 isoform X2
Refseq	XP_024537464.1	0.0	myb family transcription factor PHL7 isoform X2
Swissprot	Q9SJW0	1e-58	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	D8RPX4	0.0	D8RPX4_SELML; Uncharacterized protein
STRING	EFJ22340	0.0	(Selaginella moellendorffii)
STRING	EFJ25555	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-57	G2-like family protein

Link Out ? help Back to Top
Phytozome	442062
Entrez Gene	9641655 \| 9649510

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]