PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 440731
Common NameSELMODRAFT_440731
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 1684aa    MW: 179960 Da    PI: 5.7744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
440731genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-1715501599255
     AP2    2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
              +y+GVr+++ +g+W AeIrdp +   r r +lg++gtae Aa a++aa+++++g
  440731 1550 HYRGVRQRP-SGKWGAEIRDPQQ---RVRLWLGSYGTAEAAALAYDAAARRIKG 1599
              8********.7*********944...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7201.3E-444155IPR016040NAD(P)-binding domain
PfamPF034465.0E-367156IPR0061156-phosphogluconate dehydrogenase, NADP-binding
SuperFamilySSF517353.35E-367158IPR016040NAD(P)-binding domain
SuperFamilySSF481794.76E-28154270IPR0089276-phosphogluconate dehydrogenase C-terminal domain-like
PfamPF148331.1E-26154262IPR0291543-hydroxyisobutyrate dehydrogenase, NAD-binding domain
Gene3DG3DSA:1.10.1040.105.3E-37156271IPR0133286-phosphogluconate dehydrogenase, domain 2
Gene3DG3DSA:3.40.50.7201.0E-46289450IPR016040NAD(P)-binding domain
PfamPF034465.4E-37290449IPR0061156-phosphogluconate dehydrogenase, NADP-binding
SuperFamilySSF517351.4E-36290449IPR016040NAD(P)-binding domain
PROSITE patternPS008950293306IPR0022043-hydroxyisobutyrate dehydrogenase-related, conserved site
Gene3DG3DSA:1.10.1040.101.3E-43452581IPR0133286-phosphogluconate dehydrogenase, domain 2
SuperFamilySSF481799.98E-35452580IPR0089276-phosphogluconate dehydrogenase C-terminal domain-like
PfamPF148339.8E-35453573IPR0291543-hydroxyisobutyrate dehydrogenase, NAD-binding domain
PfamPF070051.2E-62637874IPR010737Putative sugar-binding, N-terminal domain
SuperFamilySSF1427642.48E-686371074No hitNo description
PfamPF170425.4E-379021069IPR031475Putative nucleotide-binding C-terminal domain
Gene3DG3DSA:3.20.20.701.6E-7710821327IPR013785Aldolase-type TIM barrel
SuperFamilySSF515696.01E-7010821328No hitNo description
PfamPF011164.8E-7410831334IPR000771Ketose-bisphosphate aldolase, class-II
CDDcd009471.27E-8510841326No hitNo description
CDDcd000181.29E-1615491608No hitNo description
Gene3DG3DSA:3.30.730.106.7E-2815491608IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1815501608IPR016177DNA-binding domain
PROSITE profilePS5103222.02315501607IPR001471AP2/ERF domain
PfamPF008472.2E-1015501599IPR001471AP2/ERF domain
SMARTSM003801.1E-3215501613IPR001471AP2/ERF domain
PRINTSPR003674.7E-915511562IPR001471AP2/ERF domain
PRINTSPR003674.7E-915891609IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004616Molecular Functionphosphogluconate dehydrogenase (decarboxylating) activity
GO:0008270Molecular Functionzinc ion binding
GO:0016832Molecular Functionaldehyde-lyase activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 1684 aa     Download sequence    Send to blast
MAQSAAKVAF IGLGAMGFGM ASTLVRSGFQ VQGYDISEPA MQRFCEIGGS SSSSPAHAAQ  60
DASILIVMVT NSDQADAVLF GSNGAAAVVP EGAVIVICST VAPGYIRKLD KKLTERKLYL  120
VDAPVSGGVA RAANGTLTIM AAGSKVAFDK AMPVLSGVHI AASAEAMAFA ARVGLNTRLV  180
YEVVSHSSGS SWMFINRVPH MLDDDYFPHS ALNIFVKDLG IVLSEGREHV FPLPLAAAAH  240
QQFLLGSSSG YGREDDAAVV KVWEKTAGIK VSSPTIDSLK TPEDAGRPEK IAFIGLGAMG  300
LRMASRLVAK KFSVCGFDVS KSALTKFEEI GGLAGRSPAT AAKGSQVLFI MVATEDQIEN  360
VLFADDGALS ALTAEAAIVI CSTVSPDYIT NLGTRLEDRG IHMVDAPVSG GTKGAANGSL  420
SIMASGTNEG LKMAYPVLSA LGDKLYFIGG GAGAGSTMKM VNQLLAGIHL VVAAEAVALG  480
ARAGLDTQLV FDIISNAAGS SWMFVDRVPR MLSGDYSSHS NLDTFVKDLG IVLDVAKKLC  540
IAVPLASAAH QLFLAGSASG LGKQDDAAVV KVYQQLSGVK VATTKSQAES SDLKAESASL  600
LPIIAKDVAF TNLPEEYHED PIEAICDAKR EEKAKVLVVL DDDPTGTQTV HDVTVLTEWG  660
IESIKKEFQK SPACFFILTN SRALSTGKAV ELTKAICRNV DAAASSCGNV GYTIVLRGDS  720
TLRGHFPEEA DAVCDVIGES DAWIICPFFW QGGRYTINDI HYVSDGTMLV PAGQTEFAQD  780
SVFGYKSSNL REWVEEKTKG RVSFGDVASV SIATIRKGGP SAVCEQLCNL SKNSICVVNA  840
ASERDISVFA AGMIQAEGKG KRFLCRTAAG FVSARIGLRS KPPVTPVDLE ADKQTSWLNG  900
GLILVGSYVP KTTKQVEELK LKRRGSSLQS LDVYVIAMTM SPDNVRDAEI ARVSNAADVF  960
LSAGQDTLIV TSRVLVTGSS NLESLDIGNK VSSALVEIVK RIHTRPRYII AKGGITSSDL  1020
ATKAMGASRA EVVGQALAGV PMWKLGPGSR HPGIPYIVFP GNVGGVDALA TVVSRWARPK  1080
RKSTKDILMD AESGGYAVGA FNIYNLEGAK AVISAAEAEK SPAILQLLIG MVGGLWWPPA  1140
LLLQKVLTYV PITVHFDHGN DEAELVETLE LGFDSIMADG SHLAFDDNVA FTKRIASMAH  1200
SKGLVVEAEL GRLSGTEDDQ TVEEYESKLT DIDQAKEFLE KTCVDGLAVC VGNVHGKYPA  1260
SGPKLDMELL KFDMQELRKT AADRGVLLVL HGASGLPASM IQACIDNGVR KFNVNTELRT  1320
AYTEAINGGW TPLQPQFGTT WPNFLANQES ESEKRKREER EKKKVVLDWI LIKQRYLYFI  1380
HPSQMCRGLS EPIDPPPGDY SDDGWLPKWL LDWEMDVEDL NSLPPPQMEL SPDDLFQDEL  1440
LLQDAIWSIS SSSASSNAAS PMDSSPITPN LQQIELTVQE EERRQQPPPP PLVDEIPAKI  1500
PKLEAQDANA GSLLRQFARE EQSQTDPASA IVETQGGESK RSSPAQPIKH YRGVRQRPSG  1560
KWGAEIRDPQ QRVRLWLGSY GTAEAAALAY DAAARRIKGK KAKLNFKDEE SLAYAKLHHP  1620
PAALRSKKRA RRCTSGDGGG GGDGIFQTYT RGYGDILGAL EDMPPALKDK FARFLSGCYD  1680
SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3g0o_A9e-51757352943-hydroxyisobutyrate dehydrogenase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530101.10.0uncharacterized protein LOC9660286
TrEMBLD8RDZ90.0D8RDZ9_SELML; Uncharacterized protein
STRINGEFJ293450.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-12cytokinin response factor 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]