PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

439488

Common Name

SELMODRAFT_439488

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 847aa MW: 93392 Da PI: 6.3413

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
439488	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	200	221	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rHir+H 439488 200 KCEKCSREFCSTLNYRRHIRLH 221 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.411	199	221	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	201	221	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MDFEHDVEVE AMEKSDDFVI TIPEGDGSYD EQEVDVEQDI GLAEVLESPG AGAVDSEKAA 60 SSVKGFDDEK KVKTSNSTTQ CNIVPSVEEG GGSNASKGVG KAYRKRSDSA EAKRKESEVT 120 GHRGDKSAKS FKSDDAGNKE RGFHLSDVFK GSENLAKGFQ ASDRLHSLKV PQAVVAFAQA 180 AAKVNEIPGW PLLPKPQMKK CEKCSREFCS TLNYRRHIRL HRRSLIDDKD LRHERSQLAA 240 YWDKLTAEES SEVISFKNMG IENLSGTSAF QALASFVQHP GLQPYPPAYM KAGTVLLELV 300 QNKTSLFPIP SEKLLKTLDD ASEGTFLCGG TSIAVQRFVY HGDAEKIGLE DKNVVASMSF 360 LVEQKLLKAW MAEKNVEALR CEKALVEEEE AAQRKRAKDL ERKRQKRNKQ KGRKGVDQPP 420 NADIDLGDEE VNTPRTGDDE DYPFAVDNGE GPVTEVTDEN GFLVLLRDNQ AATWETSSEE 480 KTVMENSIEM LHEEDQGQVE AALKDDNFVD QNIGRVIKDR RRTNFSSAAT YRTGDSSYQA 540 YFRPRRTQHS TRIDPYQQHY RKKLAGVYRG IVKGSNGRVV WTRKASQPSR TKDDDQEVSV 600 PVGSAEAESG HTLLVGSLSV PLEGHVRRPC SISEESNLMS KSSTPEILEG RQASWAKPTP 660 PLKVWKPVGK VGDQSGAENS RSMVEDDGTF PPKLSAVALR PAVDSDNTED GAAVDTKPCL 720 VDLHATSPSF SSKLLASFLS ERWATAVERR NTDANFKHDR TGKRSKNTKV WPINNDQNLD 780 AEAPKLSPKG SPSGVLDEAS NANGVLDNRP RNFVGNSCGK AVGRWQRNSK DKPGEQRYMP 840 RQISLA*

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MDFEHDVEVE AMEKSDDFVI TIPEGDGSYD EQEVDVEQDI GLAEVLESPG AGAVDSEKAA  60
SSVKGFDDEK KVKTSNSTTQ CNIVPSVEEG GGSNASKGVG KAYRKRSDSA EAKRKESEVT  120
GHRGDKSAKS FKSDDAGNKE RGFHLSDVFK GSENLAKGFQ ASDRLHSLKV PQAVVAFAQA  180
AAKVNEIPGW PLLPKPQMKK CEKCSREFCS TLNYRRHIRL HRRSLIDDKD LRHERSQLAA  240
YWDKLTAEES SEVISFKNMG IENLSGTSAF QALASFVQHP GLQPYPPAYM KAGTVLLELV  300
QNKTSLFPIP SEKLLKTLDD ASEGTFLCGG TSIAVQRFVY HGDAEKIGLE DKNVVASMSF  360
LVEQKLLKAW MAEKNVEALR CEKALVEEEE AAQRKRAKDL ERKRQKRNKQ KGRKGVDQPP  420
NADIDLGDEE VNTPRTGDDE DYPFAVDNGE GPVTEVTDEN GFLVLLRDNQ AATWETSSEE  480
KTVMENSIEM LHEEDQGQVE AALKDDNFVD QNIGRVIKDR RRTNFSSAAT YRTGDSSYQA  540
YFRPRRTQHS TRIDPYQQHY RKKLAGVYRG IVKGSNGRVV WTRKASQPSR TKDDDQEVSV  600
PVGSAEAESG HTLLVGSLSV PLEGHVRRPC SISEESNLMS KSSTPEILEG RQASWAKPTP  660
PLKVWKPVGK VGDQSGAENS RSMVEDDGTF PPKLSAVALR PAVDSDNTED GAAVDTKPCL  720
VDLHATSPSF SSKLLASFLS ERWATAVERR NTDANFKHDR TGKRSKNTKV WPINNDQNLD  780
AEAPKLSPKG SPSGVLDEAS NANGVLDNRP RNFVGNSCGK AVGRWQRNSK DKPGEQRYMP  840
RQISLA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002966113.1	0.0	uncharacterized protein LOC9652683
TrEMBL	D8R5F2	0.0	D8R5F2_SELML; Uncharacterized protein
STRING	EFJ32140	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3643	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-54	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	439488
Entrez Gene	9652683

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]