PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

439294

Common Name

SELMODRAFT_439294

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 361aa MW: 38449.2 Da PI: 6.1093

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
439294	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	8e-14	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++lG+g+W+ I++t+ ++Rt+ q+ s+ qky 439294 101 PWTEDEHRLFLLGLQKLGKGDWRGISKTFVTTRTPTQVASHAQKY 145 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.367	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-17	96	151	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-9	98	148	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-10	98	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-17	98	149	IPR006447	Myb domain, plants
CDD	cd00167	5.05E-9	101	146	No hit	No description
Pfam	PF00249	7.7E-11	101	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MPGDSPVCMA LEMPDEMSSC SCSNSDHENL RPSRGVRLFG VDLLSSEGMR KSVSLSNLSH 60 YATASSNNIG MQEHLDTTDG YVSDGLVQTN SNARARRKGV PWTEDEHRLF LLGLQKLGKG 120 DWRGISKTFV TTRTPTQVAS HAQKYFIRQS NLSKRKRRSS LFDISPGQDL SLPDSALAKN 180 VSLQTSFLEL GLGHDRVAIP VAPPLEKIME EKVFFPSQEG GNPSNGANFE EDKDDPVATN 240 EEPVPGTGTG AVAATRGIAI DAPAPALWLD LRSQASAMSS EQQQNEALGP LKSNVVKPVA 300 SISTGPVRIM EDRELAATGG PSILSLKLEQ PVRHSAFHVS SAFASAGAAA AGLEAPIQCT 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MPGDSPVCMA LEMPDEMSSC SCSNSDHENL RPSRGVRLFG VDLLSSEGMR KSVSLSNLSH  60
YATASSNNIG MQEHLDTTDG YVSDGLVQTN SNARARRKGV PWTEDEHRLF LLGLQKLGKG  120
DWRGISKTFV TTRTPTQVAS HAQKYFIRQS NLSKRKRRSS LFDISPGQDL SLPDSALAKN  180
VSLQTSFLEL GLGHDRVAIP VAPPLEKIME EKVFFPSQEG GNPSNGANFE EDKDDPVATN  240
EEPVPGTGTG AVAATRGIAI DAPAPALWLD LRSQASAMSS EQQQNEALGP LKSNVVKPVA  300
SISTGPVRIM EDRELAATGG PSILSLKLEQ PVRHSAFHVS SAFASAGAAA AGLEAPIQCT  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965509.1	0.0	uncharacterized protein LOC9635651
TrEMBL	D8R3E0	0.0	D8R3E0_SELML; Uncharacterized protein
STRING	EFJ32929	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP394	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	6e-36	MYB_related family protein

Link Out ? help Back to Top
Phytozome	439294
Entrez Gene	9635651

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]