PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438363

Common Name

SELMODRAFT_438363

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 627aa MW: 68479.5 Da PI: 7.0798

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438363	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.2	4.3e-18	57	138	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ + +Li++ +e++++lrrg+lk++ W+ev++ + + g+ ++ qC++k+e+l+++++++k + + +s++p++d+l+ 438363 57 WTDAATDVLIDVFEEKWNSLRRGNLKAKNWDEVGAELgNRCGVPKTGDQCRHKIEKLRGKFRQEKVVAVLG----QSKWPWYDRLN 138 ***********************************8899************************97....568***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-17	55	139	No hit	No description
PROSITE profile	PS50145	12.184	491	547	IPR001293	Zinc finger, TRAF-type
Pfam	PF02176	4.1E-10	491	549	IPR001293	Zinc finger, TRAF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009941	Cellular Component	chloroplast envelope
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MALHPFAEAN PQQPTPIAAC LPQLMKEDLQ HAHHHHHHHL HELERMSKIP INGKSAWTDA 60 ATDVLIDVFE EKWNSLRRGN LKAKNWDEVG AELGNRCGVP KTGDQCRHKI EKLRGKFRQE 120 KVVAVLGQSK WPWYDRLNMM FGGGGGGAAG GGGNNANDKA SADAKSSQEH SAFHRHQHNS 180 HVVDEDGATA TTTAPASGKS TDRDETASPR SKSGGGGSRK RGRESSSSDL GAALKYLSET 240 LIKIEECKVE LQRDNERLGF VSPKSLDRVK GDLAMAGEEE QKSVVVEEKK EEEELSPIIL 300 QECGYYDVEQ LHKATGLLLL TLAAACVEKT IGDPFNQPGS VVGDLKRELI ESLESQSQQY 360 AGAALGSLSD RVQAPKPMKI LQGFLDGFVR SKANLLARVS SRILSNDKKE DKIEEFVGEL 420 DRSGAWMVGR REMLARSLLR RIDRSMVAHC EMRFGSSEEL AAHKARCALR PTTCTNEGCT 480 DVYSAVQGGG HDARCAFKVL TCEQGCGQSV ARADMDRHCV SVCPMKMVTC PFHHVGCVDR 540 LPQGTVEVHC AGNVSSHLLA VLHVLQRLEV GIASQSQRIS NLEKALSKAQ VPMDDDAAKL 600 ELEKIKEESR TLEIPAVDVS KLTANH*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MALHPFAEAN PQQPTPIAAC LPQLMKEDLQ HAHHHHHHHL HELERMSKIP INGKSAWTDA  60
ATDVLIDVFE EKWNSLRRGN LKAKNWDEVG AELGNRCGVP KTGDQCRHKI EKLRGKFRQE  120
KVVAVLGQSK WPWYDRLNMM FGGGGGGAAG GGGNNANDKA SADAKSSQEH SAFHRHQHNS  180
HVVDEDGATA TTTAPASGKS TDRDETASPR SKSGGGGSRK RGRESSSSDL GAALKYLSET  240
LIKIEECKVE LQRDNERLGF VSPKSLDRVK GDLAMAGEEE QKSVVVEEKK EEEELSPIIL  300
QECGYYDVEQ LHKATGLLLL TLAAACVEKT IGDPFNQPGS VVGDLKRELI ESLESQSQQY  360
AGAALGSLSD RVQAPKPMKI LQGFLDGFVR SKANLLARVS SRILSNDKKE DKIEEFVGEL  420
DRSGAWMVGR REMLARSLLR RIDRSMVAHC EMRFGSSEEL AAHKARCALR PTTCTNEGCT  480
DVYSAVQGGG HDARCAFKVL TCEQGCGQSV ARADMDRHCV SVCPMKMVTC PFHHVGCVDR  540
LPQGTVEVHC AGNVSSHLLA VLHVLQRLEV GIASQSQRIS NLEKALSKAQ VPMDDDAAKL  600
ELEKIKEESR TLEIPAVDVS KLTANH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024524123.1	0.0	uncharacterized protein LOC9643743
TrEMBL	D8QXF1	0.0	D8QXF1_SELML; Uncharacterized protein
STRING	EFJ35405	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	9e-17	Trihelix family protein

Link Out ? help Back to Top
Phytozome	438363
Entrez Gene	9643743

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]