PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

431583

Common Name

SELMODRAFT_431583

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HRT-like

Protein Properties

Length: 533aa MW: 60659 Da PI: 10.5079

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
431583	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	24.5	4.7e-08	499	529	2	31
HRT-like 2 CGvile.dGsvCkrqPvkgRKRCeeHKGmRi 31 CGv + dG C+r+P gRKRC H mR+ 431583 499 CGVVSKvDGVGCTRTPRNGRKRCDLHRRMRV 529 9988755**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05542	8.0E-9	2	60	IPR008479	Protein of unknown function DUF760
Pfam	PF05542	7.1E-18	136	219	IPR008479	Protein of unknown function DUF760

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MLLEYVQNVQ PEFMELFIQK APQQVVEAMR KTVTNMLGTL PPQFFEITIT TVAENLAQLM 60 RHFRPPKTRR QDEMIFFGPE FESKVQKSQV QGSVLKWHKE DGPVAMDAVE YIEFLESEVE 120 KLQQQLERGK VSGQNELLDY LKNLEPKNLQ ELTTSAGEDA VEAMNTFVQR LIRISDAAML 180 KRTATETSAK ELARLLYWLM VVGYSIRNIE VRYDMERILG MPAKHPELPP GETIPSGSRY 240 RLHNLPSKSA VRPGIYELGI VRPCSSSRKR KKKKRLHRRD VVAVYLGQAE NVRQRLQSYG 300 QGGSHLEGWT GLEKWLPEKR VLTQIFRQGP RLFSEIFARG YSLAFRWSAT GSKESALAAE 360 KKLLHVFDYA WNKGANGARR SLDVLTKLEM QSNVVCGTRS SIATRLGCAR IFERRVGVRV 420 ELSKPKDRSE ARSFRDVIRR LFGLSIDGHE DHRKKEGDGV RPDDARKTSS SRKVCKVRIE 480 RAGTGKLYGE VTGENGLKCG VVSKVDGVGC TRTPRNGRKR CDLHRRMRVI KL*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MLLEYVQNVQ PEFMELFIQK APQQVVEAMR KTVTNMLGTL PPQFFEITIT TVAENLAQLM  60
RHFRPPKTRR QDEMIFFGPE FESKVQKSQV QGSVLKWHKE DGPVAMDAVE YIEFLESEVE  120
KLQQQLERGK VSGQNELLDY LKNLEPKNLQ ELTTSAGEDA VEAMNTFVQR LIRISDAAML  180
KRTATETSAK ELARLLYWLM VVGYSIRNIE VRYDMERILG MPAKHPELPP GETIPSGSRY  240
RLHNLPSKSA VRPGIYELGI VRPCSSSRKR KKKKRLHRRD VVAVYLGQAE NVRQRLQSYG  300
QGGSHLEGWT GLEKWLPEKR VLTQIFRQGP RLFSEIFARG YSLAFRWSAT GSKESALAAE  360
KKLLHVFDYA WNKGANGARR SLDVLTKLEM QSNVVCGTRS SIATRLGCAR IFERRVGVRV  420
ELSKPKDRSE ARSFRDVIRR LFGLSIDGHE DHRKKEGDGV RPDDARKTSS SRKVCKVRIE  480
RAGTGKLYGE VTGENGLKCG VVSKVDGVGC TRTPRNGRKR CDLHRRMRVI KL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	271	RKRKK
2	268	274	KRKKKKR
3	269	274	RKKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024522937.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	D8TD45	0.0	D8TD45_SELML; Uncharacterized protein
STRING	EFJ05416	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-34	effector of transcription2

Link Out ? help Back to Top
Phytozome	431583
Entrez Gene	9663352

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]