PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 430108 | ||||||||
Common Name | SELMODRAFT_430108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | B3 | ||||||||
Protein Properties | Length: 553aa MW: 58530 Da PI: 7.1748 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.5 | 4.1e-12 | 11 | 92 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 k+++++++ + +pk+ e+++ ++ ++ + g W+v++ +s +t+GWk+F+ +n +ke+D++vF++++ ++f v + 430108 11 TKIMKKAHMA---EMPIPKPVYEKYSTGALRG--TVILELGGSDWQVEV--GSGS----FTTGWKQFCLDNAIKENDSLVFHHQSARRF--SVEL 92 5555444444...478*********5444444..555778*********..4444....89*********************7665555..6655 PP | |||||||
2 | B3 | 38.4 | 2.2e-12 | 356 | 435 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l++p++fa+ h + e k+ + d++++ W v+ + ++r +++GW F+++++L+ +D++v+++ g+++ +v +f+ 430108 356 PCFYLSIPNEFAKVHL-P-EDLKEFDMVDSTNKAWGVRW--LGPPKRA-FSGGWCYFAQDHNLQLNDVCVLEMLGENR--VRVNIFK 435 45679*******8883.3.45679***************..8888885.788********************887544..4788876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-13 | 6 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.87 | 7 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-15 | 8 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-12 | 9 | 94 | No hit | No description |
SMART | SM01019 | 1.8E-6 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-10 | 10 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-19 | 338 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-18 | 338 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.91E-21 | 343 | 435 | No hit | No description |
PROSITE profile | PS50863 | 11.646 | 345 | 437 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-6 | 345 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-11 | 348 | 436 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MAATNSRISF TKIMKKAHMA EMPIPKPVYE KYSTGALRGT VILELGGSDW QVEVGSGSFT 60 TGWKQFCLDN AIKENDSLVF HHQSARRFSV ELYSSDGSAK PGGGAKSSTS GGNALAEAME 120 KVIKECVVHL DEESSLKFVI SKVPRVVDVE VAEPSTPRKI VKAAGIGNGP SARTRSSPKT 180 APPPAAVARV ESRKKKKQPL PVSESDAEEE APPAKRARTE PSKRREVTRA STRRSLESGS 240 GSKGRPSRRK SKVVSKITAL EVRVDSTSTL PAAKQDDTPR ERKKVAKSGT AETKTGTAEK 300 KTRERRKTSS ARKSSSSRGK KQVVPAADSA ALAQAVAFKT SNPSTVIVMK KSNIAPCFYL 360 SIPNEFAKVH LPEDLKEFDM VDSTNKAWGV RWLGPPKRAF SGGWCYFAQD HNLQLNDVCV 420 LEMLGENRVR VNIFKADPKA AQGGGEAAAP PANPAANEGA GFEAAKEDGH GDVDGGDGGN 480 GGDGGGGGGG GGGERDLDAV VTGITGGSNR DEDGIAEEEA DDDEEGDDED YDPKEDDGGD 540 DGDGGDDKET WK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002991824.1 | 0.0 | B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | D8T8C7 | 0.0 | D8T8C7_SELML; Uncharacterized protein | ||||
STRING | EFJ07086 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 8e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 430108 |
Entrez Gene | 9644472 |
Publications ? help Back to Top | |||
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