PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

422169

Common Name

SELMODRAFT_422169

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 322aa MW: 35075.8 Da PI: 8.6041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
422169	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.2e-14	140	188	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h +Er+RR+++N++f+ Lr +lPk+ K +Ka+i+ +++Y+ +L 422169 140 QRESHILAERQRREEMNDKFSSLRAMLPKS-----SKKDKASIVGDTINYVVDL 188 79*************************8.....699**********8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.18E-15	131	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.904	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-13	140	193	No hit	No description
Pfam	PF00010	1.9E-11	140	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	140	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	1.14E-6	244	317	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.0E-6	244	317	No hit	No description
PROSITE profile	PS51671	8.872	248	321	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVPNSYFRRD ANPESMSGAL KMEHDGLYWG QQQQIDPLGQ NVYPVQASGS SQGTSIQFSA 60 SPSSSTHLQA LRDFMSQGNS TGSVPLYSQQ LVPLPPPLLV PLGEDSSHFS RSALPDVDMR 120 GQYRGDVFGS EKTPHRTQLQ RESHILAERQ RREEMNDKFS SLRAMLPKSS KKDKASIVGD 180 TINYVVDLEK TLKRLQACRA KRKGCHIPKE KSLKSSPSSD PKLEASKTDT VQRLPVQVEV 240 QALGEQAVVK LVCGKSPKLV LRILTALEQC KVEVLQSNVT TLGDIAVHFF TIELTPGVSA 300 TTEELIAALE AAAAAMNSST S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002982773.1	0.0	transcription factor bHLH94 isoform X1
TrEMBL	D8SHK0	0.0	D8SHK0_SELML; Uncharacterized protein
STRING	EFJ16018	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP15271	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.3	1e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	422169
Entrez Gene	9661936

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]