PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 419617 | ||||||||
Common Name | SELMODRAFT_419617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 613aa MW: 70148.5 Da PI: 9.8408 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 507 | 547 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g W +eE e+l +v +G++ W++I++ +g R ++ ++ 419617 507 KGIWPPEEVERLQSLVLTHGKR-WTLISKLLG--RNKRNVATKY 547 5779******************.********9..6666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.915 | 424 | 501 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.5 | 428 | 503 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.03E-9 | 483 | 551 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-5 | 506 | 555 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-8 | 506 | 552 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.481 | 506 | 553 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 4.1E-8 | 510 | 566 | No hit | No description |
PROSITE profile | PS50090 | 5.146 | 555 | 612 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MGERKRKRAK DPIEEKGDGT VEDCDRTGEL TGKNAGVNRQ SDEDAGVEIA EGKEKRSRRK 60 SKHPAPEESK NEDFEGEKER EEEEEEAGHE KKKRKRKHED KDLVEEKISD GKKKLDGHEK 120 TRKKNAGGGD REGGAAQISS KSTKHKEDAG VDVEKIAKED KKKKKKKKNV PGINVEEQEN 180 QPTVCDESEI REDSTKVPLE SEKNKKLEKK KREKRIASDD TADRKVSSDD QQRRKESRQE 240 NATANVDPVP SKRKRKKDKH AAALDDAESP EAGDDQEHQE PERKKKKKKF HAVDVAEEQE 300 NNSAACYEKK KRKKKLEVAE SQDDNKLKQR EDERGSSDKQ RKEKTKKAER PVSVETGGDL 360 HTCTKNLGNH AESTIRNEKI KKKVSFGAAV VLNEAATEKK VHFGGVELQP TVPNERPLCE 420 RRLKDPLYNK KFTEEEDEAI RQAVRQFAET KGLDLHETYK LYLDRETPEQ RRLGRELSKA 480 LVACLPERNP ISVKYRAESV LDIFGQKGIW PPEEVERLQS LVLTHGKRWT LISKLLGRNK 540 RNVATKYYYV NALQKRGKYS SEEIAKVTST VHNVLAEYAR LNVPRHREED IPWRSIAAKL 600 PGRPESHYRV LW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 96 | KKRKRK |
2 | 232 | 254 | RRKESRQENATANVDPVPSKRKR |
3 | 252 | 257 | RKRKKD |
4 | 252 | 258 | RKRKKDK |
5 | 281 | 287 | ERKKKKK |
6 | 307 | 315 | EKKKRKKKL |
7 | 308 | 314 | KKKRKKK |
8 | 309 | 313 | KKRKK |
9 | 339 | 346 | QRKEKTKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002979951.2 | 0.0 | RNA polymerase I termination factor | ||||
TrEMBL | D8S9I1 | 0.0 | D8S9I1_SELML; Uncharacterized protein | ||||
STRING | EFJ18821 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5322 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 4e-13 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 419617 |
Entrez Gene | 9647088 |
Publications ? help Back to Top | |||
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