PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

418727

Common Name

BEH4-1, SELMODRAFT_418727

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

BES1

Protein Properties

Length: 411aa MW: 42379.5 Da PI: 8.6688

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
418727	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	130.3	2.2e-40	5	75	8	77
DUF822 8 twkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.e 77 ++kE+E++k+RER+RRai++kiy+GLR++G+y+lp raD+n+Vl+AL++eAGw+ve+DGttyr ++++ + 418727 5 SEKEKEKTKLRERHRRAITSKIYSGLRKHGGYNLPPRADINDVLRALATEAGWIVEPDGTTYRSQQSQAgQ 75 68*************************************************************66655521 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.3E-36	5	79	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MVKLSEKEKE KTKLRERHRR AITSKIYSGL RKHGGYNLPP RADINDVLRA LATEAGWIVE 60 PDGTTYRSQQ SQAGQSGAAT SLGGAASGSG GLAGIVGNNG ACSSGRPSSL TATATTTTTT 120 GGGGQGGATA TTTVTTSSIG GLLSAGPNNS LSNLMGSSVG AAAGYTRLLA DLAAADAGRA 180 GDCSTTASPR HIGIGAVHHG SNLSSPSPYV SPASSEGAAA PPRINTSSIL FGGNAASNQF 240 GGFLDSSSSG SRDCVVSSLH PHLSNLFPSS VVASAAAAAQ VPAIKEEFCY FPEQPDQNCQ 300 HQFMLQRQQS SMSHVSNMIY SAAQQGQLRS YGAGFGGHCS SSSRSQAQIQ QHQLPPSPAL 360 VHHQQQQQQQ QQQQQQQQQQ QQLHYPFLQE SKASNDNTPL GSPQPHNTGC *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MVKLSEKEKE KTKLRERHRR AITSKIYSGL RKHGGYNLPP RADINDVLRA LATEAGWIVE  60
PDGTTYRSQQ SQAGQSGAAT SLGGAASGSG GLAGIVGNNG ACSSGRPSSL TATATTTTTT  120
GGGGQGGATA TTTVTTSSIG GLLSAGPNNS LSNLMGSSVG AAAGYTRLLA DLAAADAGRA  180
GDCSTTASPR HIGIGAVHHG SNLSSPSPYV SPASSEGAAA PPRINTSSIL FGGNAASNQF  240
GGFLDSSSSG SRDCVVSSLH PHLSNLFPSS VVASAAAAAQ VPAIKEEFCY FPEQPDQNCQ  300
HQFMLQRQQS SMSHVSNMIY SAAQQGQLRS YGAGFGGHCS SSSRSQAQIQ QHQLPPSPAL  360
VHHQQQQQQQ QQQQQQQQQQ QQLHYPFLQE SKASNDNTPL GSPQPHNTGC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-12	21	68	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-12	21	68	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-12	21	68	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-12	21	68	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8S6Z0	0.0	D8S6Z0_SELML; Uncharacterized protein BEH4-1
STRING	EFJ20017	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10087	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	5e-15	BES1/BZR1 homolog 2

Link Out ? help Back to Top
Phytozome	418727
Entrez Gene	9659562

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]