PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

418491

Common Name

SELMODRAFT_418491

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 299aa MW: 33186.9 Da PI: 6.0353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
418491	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.3e-10	246	289	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r+RR+ri +++ L++l+P+ K++ +++LekA++Y+k +q 418491 246 IAARQRRERISQRLKILQDLVPNG-----SKVDLVTMLEKAINYVKFMQ 289 567******************5.....5**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.44E-12	233	293	No hit	No description
PROSITE profile	PS50888	14.462	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-11	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	243	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-12	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-7	247	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDVVRRTRSS SSPSFTSITN SSSSRISSCD PGDFSFLDYS QVCCRSLDLL SPDLPPPLVE 60 DSSPVNSHGY KEYSSIAPKS LYHPLEFNQS FQAQLELQQT LMGDPSFGNS SLLTPLDDHS 120 QDQRNPEDFH GQELAYYCQV EPLDEKYLSL MEHPPLYVNY LTDANRRMPP LGSSQALDQP 180 GAPRIISNSS SSPTRKRSAD DQNTTNAFSK REKIDSSPAS SCCTTALNTN LKPRSRQGTA 240 NDPQSIAARQ RRERISQRLK ILQDLVPNGS KVDLVTMLEK AINYVKFMQL QLQASVVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024539416.1	0.0	pentatricopeptide repeat-containing protein At4g02750
TrEMBL	D8S5W0	0.0	D8S5W0_SELML; Uncharacterized protein
STRING	EFJ20125	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3532	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	8e-26	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	418491
Entrez Gene	9658954

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]