PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 417311
Common NameSELMODRAFT_417311
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRF
Protein Properties Length: 813aa    MW: 82709.1 Da    PI: 9.1529
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
417311genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC67.51.7e-21281322142
     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
             daepgrCrRtDGKkWRC r  ++++k+CErH++rgr+++++s
  417311 281 DAEPGRCRRTDGKKWRCARPIVPDQKYCERHINRGRHKKKSS 322
             79************************************9987 PP
2QLQ49.81e-17211245236
     QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
             +FT  Q+++L++Q+l++Ky++a++PvPpeL+++i+
  417311 211 PFTSLQWAELEHQALVFKYILARAPVPPELIAPIR 245
             9*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-10210246IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-13211245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.585211246IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.563281325IPR014977WRC domain
PfamPF088799.1E-19282322IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MDLMGSSTNT TTSSSEKSSS SSKCRRLGDI LPATPTTSNK TARTSSDSAK QSSRSGGSSP  60
GHHGQLQHQH QHQHQRQRSC GSPTDSSTAA TAATEDHLLH TSGSISSPPN SFANSSSSSQ  120
HSGMILMPPP TMAGAGSSAV SASSYGTMGG AMAMPGMGGG GGGAMNLARS PMLFQQQPAM  180
KQSMGFQQQL AMGSASSLLG LHEAFMASRY PFTSLQWAEL EHQALVFKYI LARAPVPPEL  240
IAPIRSTSFS SILGGGGSWP CTIPSSANAG SGHGVHTNHL DAEPGRCRRT DGKKWRCARP  300
IVPDQKYCER HINRGRHKKK SSAATAAAVA AAAAAATTGG GGMGRVSSTT STSTSTSSTS  360
GIIASSHGGE HHPGELSTAF EISNASSSMF HHHRSSSLAD GSGGGGGGGG GGSNTTCIVP  420
SSCGAGGGSP GVSSHSNHPH QQSSVPLQSS YFSAGAGPLS MKDRFLPARG VGSHFVCVRI  480
WSLRFLNGIS KATSFDLRPE QLLLSEVPGG SAAALAAPGS GISANQSNFP GAAARGGVNP  540
TSAAAPPPFF QLPKSNASST SNSASSNPDS PYFSYSKLFH NASDESQHCL SSLLASPPQH  600
QHNQQLNYYA SDPSGAEKIK PDTSHALRPL FNEWPRSRDA STMTSWSDSD DRKPCQQQLH  660
KLKLGGGGTH LSISIPSTAS GGSHEDGGGN DSMVKLCMGS SVEELTDSAT NGGGVAGGGS  720
SGGGLIKPGG GVVELGWFSA ARASVGGPLA EAFNASEVKS SGLTFLGGSA RDLRQLQVVS  780
PTGVLQRSGL GSFSESSSSA SSPGSIKVEQ LH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401412SGGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024532605.10.0midnolin homolog
TrEMBLD8S1U10.0D8S1U1_SELML; Uncharacterized protein
STRINGEFJ213520.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-32growth-regulating factor 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]