PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

417099

Common Name

SELMODRAFT_417099

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 383aa MW: 43946.4 Da PI: 6.8998

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
417099	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	36.2	8.5e-12	176	227	109	163
GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 ++rvHii +++ +G QWp+L++ L++ +eg p ++iTg++ p+ + +leetg+ 417099 176 AKRVHIINYGVLYGDQWPSLIKVLSEIAEGLPLFKITGINFPS---RVNLEETGW 227 589*************************************976...566666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.9E-9	176	227	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MVVEVRAMCA KLKNLAVFPK AAFYMMLIKA PQARDFNRIP RIFYEIVTNG CLATPVQMDS 60 NPCLQLRAAL VRYQIPLESV QAQISSQEQQ SLFDCSRLDY LTRILEEKDG LELLLKLPQQ 120 QQTSYQLRPE EKAVRVWSSD VRCDAPGRDE DAEYLHPDES SQPPGHGALH QPDDPAKRVH 180 IINYGVLYGD QWPSLIKVLS EIAEGLPLFK ITGINFPSRV NLEETGWSTT CGMHLELHSI 240 ATVAWESAQP RYHLLDEARL RGRDHRQPRK LFFEKILSFK PVMLFQSVVH ADISSPFFIH 300 RFDRAWRSFL ESFEETMKLG LIDQSQLDFM DKFIMWSASP RAKPGTAWLG SARDGHVRLR 360 GLDLLNGRER RSFECFERLE AD*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MVVEVRAMCA KLKNLAVFPK AAFYMMLIKA PQARDFNRIP RIFYEIVTNG CLATPVQMDS  60
NPCLQLRAAL VRYQIPLESV QAQISSQEQQ SLFDCSRLDY LTRILEEKDG LELLLKLPQQ  120
QQTSYQLRPE EKAVRVWSSD VRCDAPGRDE DAEYLHPDES SQPPGHGALH QPDDPAKRVH  180
IINYGVLYGD QWPSLIKVLS EIAEGLPLFK ITGINFPSRV NLEETGWSTT CGMHLELHSI  240
ATVAWESAQP RYHLLDEARL RGRDHRQPRK LFFEKILSFK PVMLFQSVVH ADISSPFFIH  300
RFDRAWRSFL ESFEETMKLG LIDQSQLDFM DKFIMWSASP RAKPGTAWLG SARDGHVRLR  360
GLDLLNGRER RSFECFERLE AD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024543121.1	1e-154	scarecrow-like protein 34
TrEMBL	D8S1C8	0.0	D8S1C8_SELML; Uncharacterized protein
STRING	EFJ21823	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	8e-14	GRAS family protein

Link Out ? help Back to Top
Phytozome	417099
Entrez Gene	9638665

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]