PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 417095 | ||||||||
Common Name | SELMODRAFT_417095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 246aa MW: 27435.6 Da PI: 6.9846 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.8 | 2.5e-08 | 183 | 231 | 287 | 338 |
GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 +++ +r+i+ +vaceg + r+ t++ W +r+++aGF+ v+++e+++++++ 417095 183 QKVAARDIMTIVACEGLD---RTDTYRIWDARVKRAGFEGVAVTEEIYEKVS 231 56789************9...9999********************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50969 | 17.19 | 1 | 153 | IPR004274 | FCP1 homology domain |
Gene3D | G3DSA:3.40.50.1000 | 3.0E-23 | 2 | 164 | IPR023214 | HAD-like domain |
Pfam | PF03031 | 2.0E-24 | 2 | 160 | IPR004274 | FCP1 homology domain |
SuperFamily | SSF56784 | 7.0E-22 | 2 | 163 | IPR023214 | HAD-like domain |
SMART | SM00577 | 5.4E-4 | 2 | 141 | IPR004274 | FCP1 homology domain |
Pfam | PF03514 | 8.5E-6 | 183 | 231 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTVALDLDTS ILLHQRSQCD FKVRDNCSRK CIKKQLHLDE FLDALALFAK VVLFSSAPYA 60 ACVVKQLDPR GTHFQYVLGL SDCMLWHDTR LGKEALFKDL AILGRDLHKV VLVDDDPGFF 120 CQPGSGNEIV IGKFTGQRSD DELLKLLPVL QSLAQLDDVR PAVRTYQQPQ AQEGNKPGSG 180 YIQKVAARDI MTIVACEGLD RTDTYRIWDA RVKRAGFEGV AVTEEIYEKV SGACASRNKE 240 VKERM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8S1C3 | 0.0 | D8S1C3_SELML; Uncharacterized protein | ||||
STRING | EFJ21686 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 5e-07 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 417095 |
Entrez Gene | 9638661 |
Publications ? help Back to Top | |||
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