PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

415005

Common Name

SELMODRAFT_415005

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 289aa MW: 33037.8 Da PI: 5.3733

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
415005	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.7	5.3e-17	153	219	1	68
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 rW + e+++ i +r +mee+ + + ++k+ W+ ++ kmrerg+ r+++qCk kw++l ryk + ++ 415005 153 RWGHTETKDFISIRADMEEDPSLS-SQKNWWDPIAGKMRERGYARTSEQCKRKWKKLVSRYKVSESMQ 219 8******************998.66789******************************887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.588	1	31	IPR017877	Myb-like domain
CDD	cd12203	1.09E-21	152	216	No hit	No description
PROSITE profile	PS50090	7.062	153	209	IPR017877	Myb-like domain
Pfam	PF13837	5.5E-14	153	218	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MREARLWDLV ASRMSFQCSG RECEREWRAL VSRYEEKGLQ EGNASLFEEI DAIFKSRGEE 60 VMVFTHSEEE SVSIDSHEDG ESEAERDVQQ VLEDMFHRMP CVPPGWLWQE GMMAKEKNGD 120 TGLDDEEHHP ALSSSAEAST QCKQEGVEER MPRWGHTETK DFISIRADME EDPSLSSQKN 180 WWDPIAGKMR ERGYARTSEQ CKRKWKKLVS RYKVSESMQR FAALRKLMHA IPGEKNDRFG 240 ARAEVPLLSG HGRTVQGEAT EDRDSREGTK GISRGEPSGL RPAERGRR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024535183.1	1e-155	trihelix transcription factor GT-3a
TrEMBL	D8RUA8	0.0	D8RUA8_SELML; Uncharacterized protein
STRING	EFJ24372	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-13	Trihelix family protein

Link Out ? help Back to Top
Phytozome	415005
Entrez Gene	9636888

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]