PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

413913

Common Name

SELMODRAFT_413913

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 363aa MW: 38879.6 Da PI: 8.2416

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
413913	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.8	3.9e-20	32	123	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 Wt+qev L++a++e++++l+rg+ k ++Wee++ ++ + + ++p+qCk+k+e+++k+y+++k++++ + +++s s++++f+++e 413913 32 WTDQEVWFLLDAYEEKWNQLERGNVKSKHWEEIAHRLathsSGLWVAKTPTQCKNKIEDMKKKYRAEKAMKGTGvggAPGSYSKWVFFQRME 123 ***********************************77433334599*******************98744469999*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.075	32	92	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-19	32	125	No hit	No description
SMART	SM00595	5.6E-4	39	130	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAGMMQSPSH ADGSDGKDKD RGDGARKEFN FWTDQEVWFL LDAYEEKWNQ LERGNVKSKH 60 WEEIAHRLAT HSSGLWVAKT PTQCKNKIED MKKKYRAEKA MKGTGVGGAP GSYSKWVFFQ 120 RMESLLARNG FKSVVGMPGG MDNGEHAQPA VMELDSFNQI ESHLHFRQCT PGAATAAAGR 180 IGEKEIEDED TSFTTPHHHV AKENGSLTSL LDPCSRVREE AVACLDGRGG GGGGAGGNGG 240 GGGGVGCGGG GFKRRKHAGG ASSMNEVVAV MKSFGESLLR IEEAQIQMQR EVARLNAEAE 300 LRRIEMEAKR AEMMLNTQLQ IARLFSSNKP RRKKPVKKAE NAGGGGGGGG GGGGASQEME 360 DP*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAGMMQSPSH ADGSDGKDKD RGDGARKEFN FWTDQEVWFL LDAYEEKWNQ LERGNVKSKH  60
WEEIAHRLAT HSSGLWVAKT PTQCKNKIED MKKKYRAEKA MKGTGVGGAP GSYSKWVFFQ  120
RMESLLARNG FKSVVGMPGG MDNGEHAQPA VMELDSFNQI ESHLHFRQCT PGAATAAAGR  180
IGEKEIEDED TSFTTPHHHV AKENGSLTSL LDPCSRVREE AVACLDGRGG GGGGAGGNGG  240
GGGGVGCGGG GFKRRKHAGG ASSMNEVVAV MKSFGESLLR IEEAQIQMQR EVARLNAEAE  300
LRRIEMEAKR AEMMLNTQLQ IARLFSSNKP RRKKPVKKAE NAGGGGGGGG GGGGASQEME  360
DP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002973657.2	0.0	trihelix transcription factor ASIL1
TrEMBL	D8RR12	0.0	D8RR12_SELML; Uncharacterized protein
STRING	EFJ25317	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4409	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	7e-18	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	413913
Entrez Gene	9641926

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]