PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

412762

Common Name

SELMODRAFT_412762

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRF

Protein Properties

Length: 755aa MW: 77767 Da PI: 9.8509

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
412762	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	67.7	1.6e-21	278	319	1	42
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 daepgrCrRtDGKkWRC r ++++k+CErH++rgr+++++s 412762 278 DAEPGRCRRTDGKKWRCARPIVPDQKYCERHINRGRHKKKSS 319 79************************************9987 PP
2	QLQ	50	9.2e-18	208	242	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT Q+++L++Q+l++Ky++a++PvPpeL+++i+ 412762 208 PFTSLQWAELEHQALVFKYILARAPVPPELIAPIR 242 9*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-10	207	243	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.585	208	243	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.8E-13	208	242	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.563	278	322	IPR014977	WRC domain
Pfam	PF08879	8.3E-19	279	319	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MDLMGSSTNT TTSSSEKSSS SSKCRRLGDI LPATPTTSNK TARTSSDSAK QSSRSGGSSP 60 GHHGQQQHQH QHQRQRSCGS PTDSSTAATA ATEDHLLHTS GSISSPPNSF ANSSSSSQHS 120 GMILMPPPTM AGAGPSAVSA SSYGTMGGAM AMPGMGGGGG AMNLARSPML FQQQPAMKQS 180 MGFQQQLAMG SASSLLGLHE AFMASRYPFT SLQWAELEHQ ALVFKYILAR APVPPELIAP 240 IRSTSFSSIL GGGGSWPCTI PSSANAGSGH GVHTNHLDAE PGRCRRTDGK KWRCARPIVP 300 DQKYCERHIN RGRHKKKSSA ATAAAVAAAA AATTGGGGMG RVSSTTSTST STSSTSGIIA 360 SSHGGEHHPG ELSTAFEISN ASSSMFHHHR SSSLADARTR KLARWRFLPA RGVGSHFVCV 420 RIWSLRFLNG ISKATSFDLR PEQLLLSEVP GGSAAALAAP GSGISANQSN FPGAAARGGV 480 NPTSAAAPPP FFQLPKSNAS STSNSASSNP DSPYFSYSKL FHNASDESQH CLSSLLASPP 540 QHQHNQQLNY YASDPSVAEK IKPDTSHALR PLFNEWPRSR DASTMTSWSD SDDRKPCQQQ 600 LHKLKLGGGG THLSISIPST ASGGSHEDGG GNDSMVKLCM GSSVEELTDS ATNGGGGGGG 660 GSSGGGLIKP GGGVVELGWF SAARASVGGP LAEAFNASEV KSSGLTFLGG SARDLRQLQV 720 VSPTGVLQRS GLGSFSESSS SASSPGSIKV EQLH*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MDLMGSSTNT TTSSSEKSSS SSKCRRLGDI LPATPTTSNK TARTSSDSAK QSSRSGGSSP  60
GHHGQQQHQH QHQRQRSCGS PTDSSTAATA ATEDHLLHTS GSISSPPNSF ANSSSSSQHS  120
GMILMPPPTM AGAGPSAVSA SSYGTMGGAM AMPGMGGGGG AMNLARSPML FQQQPAMKQS  180
MGFQQQLAMG SASSLLGLHE AFMASRYPFT SLQWAELEHQ ALVFKYILAR APVPPELIAP  240
IRSTSFSSIL GGGGSWPCTI PSSANAGSGH GVHTNHLDAE PGRCRRTDGK KWRCARPIVP  300
DQKYCERHIN RGRHKKKSSA ATAAAVAAAA AATTGGGGMG RVSSTTSTST STSSTSGIIA  360
SSHGGEHHPG ELSTAFEISN ASSSMFHHHR SSSLADARTR KLARWRFLPA RGVGSHFVCV  420
RIWSLRFLNG ISKATSFDLR PEQLLLSEVP GGSAAALAAP GSGISANQSN FPGAAARGGV  480
NPTSAAAPPP FFQLPKSNAS STSNSASSNP DSPYFSYSKL FHNASDESQH CLSSLLASPP  540
QHQHNQQLNY YASDPSVAEK IKPDTSHALR PLFNEWPRSR DASTMTSWSD SDDRKPCQQQ  600
LHKLKLGGGG THLSISIPST ASGGSHEDGG GNDSMVKLCM GSSVEELTDS ATNGGGGGGG  660
GSSGGGLIKP GGGVVELGWF SAARASVGGP LAEAFNASEV KSSGLTFLGG SARDLRQLQV  720
VSPTGVLQRS GLGSFSESSS SASSPGSIKV EQLH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RLE2	0.0	D8RLE2_SELML; Uncharacterized protein
STRING	EFJ26904	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3357	12	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	9e-33	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	412762
Entrez Gene	9650380

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]