PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 409925 | ||||||||
Common Name | SELMODRAFT_409925 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | SRS | ||||||||
Protein Properties | Length: 604aa MW: 61827.2 Da PI: 8.2228 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 196.1 | 1.1e-60 | 366 | 541 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss.. 104 g+a+C++CGnqakkdC+++RCRtCCksr++dC+thvkstWvpaakrrerq+ +aaa + + + +skr+r+l s+++++++ + + + ++ 409925 366 GGATCKECGNQAKKDCQFQRCRTCCKSRNYDCSTHVKSTWVPAAKRRERQALEAAAIAAG---QPRPRSKRTRSLALGGGSSSAAAQVGGGMTANPSSLLGlp 465 6789*********************************************99998875443...4556677777775555555555555544433333322245 PP DUF702 105 ...........................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 lP+ev+++a+f+cv+v++++dge+e+aYq++v+igGhvfkG+LydqG+e 409925 466 gpssprssadlpvflplytaassyrgvLPPEVRAQALFKCVKVTGIEDGENEYAYQATVKIGGHVFKGVLYDQGVE 541 677899999*****************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.3E-57 | 367 | 541 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.8E-25 | 369 | 411 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.0E-27 | 493 | 540 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MIYRVLDENS FDLGPRYRNC SVVLGGRELL REKNPAAVAP AVVESRTGSS TTTRDLIGAS 60 SSGGGSTTPP WIVPSSRDWL LDPGGPGEHD HHGGVIQSAA SGAGGSDGWG RAVGYGFVGS 120 HPSPGDGGLG PGGGGGGGGG DGGGGASGLG LAPHHHLHLR DILGRGPASE EFGYHQLHQQ 180 HQRASLRGSS EHAHHHHHHP GEQGGDQGGQ GSRVASFEAY ETTRNVGGIG LLRTGLEAAA 240 AAVGGAPDPK SVADHPHHHH HHHHAPWASA PPPSVRELSG ARGIDVVPLA ERFSLEAAAA 300 AAQEKNPHPL QLVQIQGGAQ QQAQQNPITS VALIQSQNPS PSQQQQQQQG TDSSSSRPHG 360 RGHQPGGATC KECGNQAKKD CQFQRCRTCC KSRNYDCSTH VKSTWVPAAK RRERQALEAA 420 AIAAGQPRPR SKRTRSLALG GGSSSAAAQV GGGMTANPSS LLGLPGPSSP RSSADLPVFL 480 PLYTAASSYR GVLPPEVRAQ ALFKCVKVTG IEDGENEYAY QATVKIGGHV FKGVLYDQGV 540 EAPSAAAAAP AAAAPGGVAH QAAPIAGLAD LQLGASRSSM PSSSGYLDPS QIYGSTTLFG 600 GMA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00152 | DAP | Transfer from AT1G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024529384.1 | 0.0 | uncharacterized protein LOC9658861 | ||||
TrEMBL | D8RCW6 | 0.0 | D8RCW6_SELML; Uncharacterized protein | ||||
STRING | EFJ30211 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 6e-26 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | 409925 |
Entrez Gene | 9658861 |
Publications ? help Back to Top | |||
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