PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

409922

Common Name

SELMODRAFT_409922

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GATA

Protein Properties

Length: 298aa MW: 33073.6 Da PI: 5.6178

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
409922	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.8	7.3e-14	212	248	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cg + Tp++R+gp g+ktLCnaCGl+++ kg+ 409922 212 CQGCGCASgtTPMMRKGPAGPKTLCNACGLMWANKGV 248 8989999888************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	13.173	77	112	IPR010399	Tify domain
SMART	SM00979	1.1E-4	77	112	IPR010399	Tify domain
Pfam	PF06200	2.0E-9	80	110	IPR010399	Tify domain
PROSITE profile	PS51017	10.824	148	190	IPR010402	CCT domain
Pfam	PF06203	5.0E-14	148	188	IPR010402	CCT domain
SMART	SM00401	1.7E-8	206	260	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.18E-10	209	264	No hit	No description
Gene3D	G3DSA:3.30.50.10	9.4E-13	210	249	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.25E-11	211	258	No hit	No description
Pfam	PF00320	1.4E-11	212	248	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.576	217	262	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDHLHEHQRS TIDRHHEFEN QGFVEEEEEA GAKGAGEGGE GAHGFQEEED DGAGDGAGDG 60 DGAMVDLEEE EPVMDEEHAG GSQLTLSYQG EVYLFENVPV EKVHDVLTVL GGQEIQSFTN 120 VPSYLAYPKN QSLLEPPGPG QRLNPRDREE YIRRYREKRE RRIWGKRILY SVRSNVAVKM 180 NRHKGQFAPF KVKEEESEEK PATSTPAVET VCQGCGCASG TTPMMRKGPA GPKTLCNACG 240 LMWANKGVLK SSQVREQKTP QQPLQHQQHQ QQQDDLVPCQ NSSPKVPRGT KRKTRAT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	159	RRYREKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002968797.1	0.0	GATA transcription factor 17
TrEMBL	D8RCW3	0.0	D8RCW3_SELML; Uncharacterized protein
STRING	EFJ29913	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP831	16	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	4e-38	ZIM-like 1

Link Out ? help Back to Top
Phytozome	409922
Entrez Gene	9651218

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]