PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 409669
Common NameSELMODRAFT_409669
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Trihelix
Protein Properties Length: 553aa    MW: 60934.3 Da    PI: 9.8712
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
409669genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.13.5e-21175253285
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
               Wt+ e+l+Li++r+e+e r+ r+ +k  lW+e+++ ++++ f r ++qC++kwe+l   yk++++g k+r  e+    p++d+l
    409669 175 WTRPETLKLIRLRTELEPRFARTGRKTELWDEIAESLQRERFCRDAQQCRDKWEKLTAGYKEVRDGVKER--ED---NPFYDEL 253
               ********************************************************************97..33...4788876 PP
2trihelix67.82.1e-21456535286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               W++ evl+Li++r eme+++ ++ ++++lW+ev++ ++++g++r  kqC+ekw++l  +yk +++g+++r  ++s    yf +l+
    409669 456 WKRTEVLQLIKLRGEMENKFTKSTRRAALWDEVADLLKAQGIKRDGKQCREKWDKLMAEYKDVADGKRER--GES---HYFAELT 535
               ********************************************************************97..333...4788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.339167231IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-4169231IPR009057Homeodomain-like
SMARTSM007170.17171233IPR001005SANT/Myb domain
PfamPF138371.5E-17173253No hitNo description
CDDcd122037.41E-26173238No hitNo description
PROSITE profilePS500908.211448512IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-5449513IPR009057Homeodomain-like
SMARTSM007170.096452514IPR001005SANT/Myb domain
PfamPF138377.4E-18454536No hitNo description
CDDcd122033.30E-24454518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRVKCRGRRE IGISKSGAGI LTRSSAPGRW NLAPLRQKAR EVGGGAKMME GGQRGALVVF  60
SSSPSPLPSL QQCLSPLPLD AKLGTPDASA TNFQPCSVAL APPPLPAPTF PFALADSKSL  120
GAAPLAMEPP LVALNDPAVA GGVGNGSATV TEAEMEVEED KKQRDREHKK RSKNWTRPET  180
LKLIRLRTEL EPRFARTGRK TELWDEIAES LQRERFCRDA QQCRDKWEKL TAGYKEVRDG  240
VKEREDNPFY DELYPLLSGK LIKKAASTTG KEKEIFGMDS GGEAQLPEGG GGGGGGGVLF  300
KDVLDFESGS RGGDKATTRD EEEEDLEGRP PTAKKRRRVP NKYVAVTDLL AVQSLLETVL  360
ARQQRFFRDV LEAMERKEQQ REQLRLEKEE KWRAEERAQR LVFNNAMVAL TQKLVGERLG  420
VPSESLMVFP QSPDGGGAHQ GGGGSGGGPK KRSKNWKRTE VLQLIKLRGE MENKFTKSTR  480
RAALWDEVAD LLKAQGIKRD GKQCREKWDK LMAEYKDVAD GKRERGESHY FAELTAIVTK  540
PPEDFAGGKN VT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334338KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529458.10.0trihelix transcription factor GTL1
TrEMBLD8RC240.0D8RC24_SELML; Uncharacterized protein
STRINGEFJ297760.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1063658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.18e-13GT-2-like 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]