PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

408627

Common Name

SELMODRAFT_408627

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Nin-like

Protein Properties

Length: 400aa MW: 44210.8 Da PI: 6.1318

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
408627	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.8	4.9e-24	275	323	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ei+ ++l+ y+++pi++A+k+L+v+lTvLK++CR++GI+RWPhRk+ksl 408627 275 EITPDELACYYAMPITEASKKLKVGLTVLKKRCREFGIPRWPHRKLKSL 323 78999******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	251	343	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-20	276	323	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MGSATNIAKQ TVLVLAMVLL GGLSTEARVC DHDSPANSLV IHVRLVLDLE SGAHRLKGSR 60 DSRSSRRQMV WSFESLLRGE AIERLWEDLL RGQRFDPLSS AGQFQSPGGG RGRDEQQGNF 120 KESQTQLVFF EPDATLAGHS FPCIKPAMAI SESSSESDLV LSPIPSSVFA TAFHEHASDI 180 DGQLLLDPSF VESVFDGDGM LIDGFYTDSS FASFLAPTPA LQPQTLSSPL SLSDESSSSQ 240 TTLVEENGQN VPVNRQRRQR SARSPKSGPT ERMLEITPDE LACYYAMPIT EASKKLKVGL 300 TVLKKRCREF GIPRWPHRKL KSLDGLIHNI QELSKESPSS GKKKFEDAVS ELEVQKRNMQ 360 ANPAVDLSDD TKRLRQACFK QSYKQRRQAL ARLEEDDEE*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MGSATNIAKQ TVLVLAMVLL GGLSTEARVC DHDSPANSLV IHVRLVLDLE SGAHRLKGSR  60
DSRSSRRQMV WSFESLLRGE AIERLWEDLL RGQRFDPLSS AGQFQSPGGG RGRDEQQGNF  120
KESQTQLVFF EPDATLAGHS FPCIKPAMAI SESSSESDLV LSPIPSSVFA TAFHEHASDI  180
DGQLLLDPSF VESVFDGDGM LIDGFYTDSS FASFLAPTPA LQPQTLSSPL SLSDESSSSQ  240
TTLVEENGQN VPVNRQRRQR SARSPKSGPT ERMLEITPDE LACYYAMPIT EASKKLKVGL  300
TVLKKRCREF GIPRWPHRKL KSLDGLIHNI QELSKESPSS GKKKFEDAVS ELEVQKRNMQ  360
ANPAVDLSDD TKRLRQACFK QSYKQRRQAL ARLEEDDEE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024527925.1	0.0	protein RKD2
TrEMBL	D8R8W5	0.0	D8R8W5_SELML; Uncharacterized protein
STRING	EFJ32133	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-26	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	408627
Entrez Gene	9632609

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]