PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 408072 | ||||||||
Common Name | SELMODRAFT_408072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | G2-like | ||||||||
Protein Properties | Length: 112aa MW: 12501 Da PI: 6.2327 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.9 | 1.6e-11 | 67 | 101 | 15 | 50 |
G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 +ave+L G ekA+P++ile+m+v++Lt+++v+S L 408072 67 TKAVEEL-GLEKAIPSRILEIMGVESLTRHNVASRL 101 68*****.**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-10 | 63 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-10 | 68 | 101 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MKSYAGESVN GQLTSSNDEV TLDDELESMQ RSASDHTGTV DAAQQEQHMQ RVENCHKKER 60 NLTTKKTKAV EELGLEKAIP SRILEIMGVE SLTRHNVASR LRVQEHHCML V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8R739 | 2e-75 | D8R739_SELML; Uncharacterized protein | ||||
STRING | EFJ31819 | 3e-76 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2840 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-12 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | 408072 |
Entrez Gene | 9634718 |
Publications ? help Back to Top | |||
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