PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 407131 | ||||||||
Common Name | SELMODRAFT_407131, WOX3-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 249aa MW: 27949.3 Da PI: 8.239 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.1 | 4.1e-15 | 59 | 114 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl.gLterqVkvWFqNrRakekk 57 +R+ ++++ql++Lee+++k ps e ++ +A+ + +++ ++V++WF N++ +ek+ 407131 59 QRWEPNSYQLQILEEFYAKATPPSPENIANIAELVgQVDHSKVYYWFSNKKSREKR 114 7**********************************99******************7 PP | |||||||
2 | Wus_type_Homeobox | 53.8 | 4.6e-18 | 58 | 116 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW P++ Q++iLee y +++ P+ e+i +i++ G+++ V+yWF N+k+Re++k+ 407131 58 QQRWEPNSYQLQILEEFYAKAT-PPSPENIANIAEL---VGQVDHSKVYYWFSNKKSREKRKR 116 79****************9875.699999**99865...5*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0084 | 51 | 119 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.77 | 54 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-10 | 58 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-11 | 58 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.1E-13 | 59 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.53E-4 | 60 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MPRSKQQASR ASSVSDQIDQ ERREMRLEIK ALHVHHRSQR NNINISSEPA PPRPVGVQQR 60 WEPNSYQLQI LEEFYAKATP PSPENIANIA ELVGQVDHSK VYYWFSNKKS REKRKRRRLE 120 EAGASASSSP AFSAIATTAA ASSGSEQSHH QSYADQIVND GSFLPDACLF ETNVTLEQPR 180 IVIRLWPWSS SSIVALAVDL DIDNMQQASK AAIIFATDDL HVFACTVGKW KLDDYRNVLL 240 SSTFWPKI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 118 | EKRKRRRL |
2 | 112 | 117 | KRKRRR |
3 | 113 | 117 | RKRRR |
4 | 114 | 118 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8R404 | 0.0 | D8R404_SELML; Uncharacterized protein WOX3-2 | ||||
STRING | EFJ33027 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-08 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | 407131 |
Entrez Gene | 9634659 |
Publications ? help Back to Top | |||
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